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(-) Description

Title :  ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE VARIANT R194A FROM MYCOBACTERIUM TUBERCULOSIS WITH PYROPHOSPHATE, MG2+ AND ANTHRANILATE BOUND
 
Authors :  T. V. M. Cookson, G. L. Evans, E. J. Parker, J. S. Lott
Date :  05 Dec 14  (Deposition) - 25 Nov 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Anthranilate Phosphoribosyltransferase, Anthranilic Acids, Mycobacterium Tuberculosis, Magnesium, Tryptophan, Mutation, Transferase, Magnesium Binding, Phosphoribosyl Pyrophosphate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. V. Cookson, G. L. Evans, A. Castell, E. N. Baker, J. S. Lott, E. J. Parker
Structures Of Mycobacterium Tuberculosis Anthranilate Phosphoribosyltransferase Variants Reveal The Conformationa Changes That Facilitate Delivery Of The Substrate To The Active Site.
Biochemistry V. 54 6082 2015
PubMed-ID: 26356348  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00612

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TRPD
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1BE24Ligand/Ion2-AMINOBENZOIC ACID
2GOL5Ligand/IonGLYCEROL
3MG4Ligand/IonMAGNESIUM ION
4POP2Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:106 , GLY A:107 , ASN A:117 , LEU A:118 , SER A:119 , THR A:120 , LYS A:135 , GLY A:147 , GLU A:252 , MG A:402 , MG A:403 , HOH A:594 , HOH A:652 , HOH A:653 , HOH A:713 , HOH A:714 , HOH A:727binding site for residue POP A 401
02AC2SOFTWARESER A:119 , GLU A:252 , POP A:401 , MG A:403 , HOH A:586 , HOH A:594binding site for residue MG A 402
03AC3SOFTWAREASP A:251 , GLU A:252 , POP A:401 , MG A:402 , HOH A:594 , HOH A:598 , HOH A:612 , HOH A:652binding site for residue MG A 403
04AC4SOFTWAREVAL A:106 , GLY A:107 , THR A:108 , HIS A:136 , ASN A:138 , ARG A:193 , GLY A:206 , BE2 A:405 , HOH A:638 , HOH A:755binding site for residue BE2 A 404
05AC5SOFTWAREMET A:86 , ASN A:138 , ALA A:179 , PRO A:180 , TYR A:186 , ARG A:193 , GLY A:206 , BE2 A:404 , HOH A:626 , HOH A:639 , HOH A:670binding site for residue BE2 A 405
06AC6SOFTWAREARG A:215 , ALA A:236 , ARG A:237 , ARG A:238 , LEU A:305 , GLY A:306 , GLY A:307 , ILE A:351 , ASP A:352 , GLU A:357 , HOH A:522 , HOH A:817binding site for residue GOL A 406
07AC7SOFTWAREGLY A:43 , ALA A:46 , TRP A:47 , ASP A:50 , ARG A:346 , HOH A:530binding site for residue GOL A 407
08AC8SOFTWAREVAL B:106 , GLY B:107 , ASN B:117 , SER B:119 , THR B:120 , LYS B:135 , GLU B:252 , MG B:402 , MG B:403 , HOH B:593 , HOH B:682binding site for residue POP B 401
09AC9SOFTWARESER B:119 , GLU B:252 , POP B:401 , MG B:403 , HOH B:586 , HOH B:682binding site for residue MG B 402
10AD1SOFTWARETHR B:115 , ASP B:251 , GLU B:252 , POP B:401 , MG B:402 , HOH B:622 , HOH B:682binding site for residue MG B 403
11AD2SOFTWAREASN B:138 , PRO B:180 , HIS B:183 , TYR B:186 , ARG B:187 , ALA B:190binding site for residue BE2 B 404
12AD3SOFTWAREGLY B:137 , ASN B:138 , GLY B:206 , HOH B:637 , HOH B:649 , HOH B:660 , HOH B:673binding site for residue BE2 B 405
13AD4SOFTWAREGLY B:43 , ALA B:46 , TRP B:47 , ASP B:50 , GLU B:342 , ARG B:346binding site for residue GOL B 406
14AD5SOFTWAREARG B:237 , ARG B:238 , LEU B:305 , GLY B:306 , GLY B:307 , ILE B:351 , ASP B:352 , GLU B:357binding site for residue GOL B 407
15AD6SOFTWAREARG B:263 , VAL B:325binding site for residue GOL B 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X5E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X5E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X5E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X5E)

(-) Exons   (0, 0)

(no "Exon" information available for 4X5E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee.........hhhhhhhhhhhhh...eeeee.....hhhhhhhhhh.....hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee.....hhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5e A  24 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRALSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRAEIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQIL 371
                                    33        43        53        63        73        83        93       103       113       123       133      |146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366     
                                                                                                                                              140|                                                                                                                                                                                                                                   
                                                                                                                                               144                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh............eeeee.........hhhhhhhhhhhhh...eeeee....hhhhhhhhh......hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x5e B  24 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRASGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRAEIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 370
                                    33        43        53        63        73        83        93       103       113       123       133      |147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367   
                                                                                                                                              140|                                                                                                                                                                                                                                 
                                                                                                                                               145
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X5E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X5E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X5E)

(-) Gene Ontology  (14, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_MYCTA | A5U4M0: 4x58 4x59 4x5a 4x5b 4x5c 4x5d 4zof 4zoj 4zok 4ztv 5bo2 5bo3
        TRPD_MYCTU | P9WFX5: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4giu 4gkm 4ij1 4m0r 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv 4x58 4x59 4x5a 4x5b 4x5c 4x5d 5bne 5byt 5c1r 5c2l 5c7s

(-) Related Entries Specified in the PDB File

4x58 4x59 4x5a 4x5b 4x5c 4x5d