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(-) Description

Title :  BIANTHRANILATE-LIKE ANALOGUE BOUND IN INNER SITE OF ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (ANPRT; TRPD).
 
Authors :  G. L. Evans, E. N. Baker, J. S. Lott, Tb Structural Genomics Consorti (Tbsgc)
Date :  09 Aug 12  (Deposition) - 14 Aug 13  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Magnesium Binding, Phophoribosylpyrophosphate, Prpp, Inhibitor Complex, Bi-Anthranilate-Like Analogue, Tb Structural Genomics Consortium, Tbsgc, Phosphoribosyltransferase, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. L. Evans, S. A. Gamage, E. M. Bulloch, E. N. Baker, W. A. Denny, J. S. Lott
Repurposing The Chemical Scaffold Of The Anti-Arthritic Dru Lobenzarit To Target Tryptophan Biosynthesis In Mycobacterium Tuberculosis.
Chembiochem V. 15 852 2014
PubMed-ID: 24623674  |  Reference-DOI: 10.1002/CBIC.201300628

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: BL21(DE3) PGROESL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MT2248, MTCY190.03C, RV2192C, TRPD
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric/Biological Unit (5, 17)
No.NameCountTypeFull Name
16362Ligand/Ion2-[(2-CARBOXY-5-METHYLPHENYL)AMINO]-3-METHYLBENZOICACID
2DMS3Ligand/IonDIMETHYL SULFOXIDE
3GOL6Ligand/IonGLYCEROL
4MG4Ligand/IonMAGNESIUM ION
5PRP2Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:106 , GLY A:107 , GLY A:109 , GLY A:110 , ASN A:117 , SER A:119 , THR A:120 , LYS A:135 , ASN A:138 , ALA A:140 , ALA A:141 , SER A:142 , SER A:143 , GLY A:146 , GLY A:147 , GLU A:252 , MG A:402 , MG A:403 , 636 A:404 , HOH A:513 , HOH A:529 , HOH A:547 , HOH A:590 , HOH A:655 , HOH A:723 , HOH A:724 , HOH A:725 , HOH A:727BINDING SITE FOR RESIDUE PRP A 401
02AC2SOFTWARESER A:119 , GLU A:252 , PRP A:401 , MG A:403 , HOH A:506 , HOH A:723BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREASP A:251 , GLU A:252 , PRP A:401 , MG A:402 , HOH A:581 , HOH A:723 , HOH A:724 , HOH A:728BINDING SITE FOR RESIDUE MG A 403
04AC4SOFTWAREASN A:138 , ALA A:179 , HIS A:183 , TYR A:186 , ARG A:193 , GLY A:206 , PRP A:401 , HOH A:520 , HOH A:621 , HOH A:752 , HOH A:761BINDING SITE FOR RESIDUE 636 A 404
05AC5SOFTWAREARG A:215 , ARG A:238 , ALA A:265 , ALA A:266 , GLY A:329 , HOH A:578 , HOH A:755BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWARELEU A:305 , GLY A:307 , ILE A:351 , GLU A:357 , HOH A:738 , ALA B:236 , ARG B:237BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWARELEU A:242 , ARG A:263 , VAL A:325 , GLY A:329 , TRP A:336 , HOH A:735BINDING SITE FOR RESIDUE GOL A 407
08AC8SOFTWARETHR A:70 , PRO A:199 , THR A:200 , VAL A:201 , PHE A:223 , LEU A:226 , HOH A:675BINDING SITE FOR RESIDUE DMS A 408
09AC9SOFTWAREGLY A:110 , GLY A:112 , SER A:142 , HOH A:547BINDING SITE FOR RESIDUE DMS A 409
10BC1SOFTWAREGLY B:107 , GLY B:109 , GLY B:110 , ASN B:117 , SER B:119 , THR B:120 , LYS B:135 , ASN B:138 , ALA B:140 , ALA B:141 , SER B:142 , SER B:143 , GLY B:146 , GLY B:147 , GLU B:252 , MG B:402 , MG B:403 , 636 B:404 , HOH B:509 , HOH B:530 , HOH B:535 , HOH B:553 , HOH B:569 , HOH B:581 , HOH B:590 , HOH B:613 , HOH B:631BINDING SITE FOR RESIDUE PRP B 401
11BC2SOFTWARESER B:119 , GLU B:252 , PRP B:401 , MG B:403 , HOH B:504 , HOH B:509BINDING SITE FOR RESIDUE MG B 402
12BC3SOFTWAREASP B:251 , GLU B:252 , PRP B:401 , MG B:402 , HOH B:509 , HOH B:565 , HOH B:631 , HOH B:695BINDING SITE FOR RESIDUE MG B 403
13BC4SOFTWAREASN B:138 , ALA B:179 , HIS B:183 , TYR B:186 , ARG B:193 , THR B:209 , PRP B:401 , HOH B:507 , HOH B:512 , HOH B:635 , HOH B:660 , HOH B:711 , HOH B:725BINDING SITE FOR RESIDUE 636 B 404
14BC5SOFTWAREALA A:236 , ARG A:237 , LEU B:305 , GLY B:307 , ILE B:351 , ASP B:352 , GLU B:357 , HOH B:718 , HOH B:721BINDING SITE FOR RESIDUE GOL B 405
15BC6SOFTWAREARG B:215 , ARG B:238 , ALA B:265 , ALA B:266 , GLY B:329BINDING SITE FOR RESIDUE GOL B 406
16BC7SOFTWAREGLU A:81 , HOH A:553 , HOH A:634 , HOH A:656 , ALA B:128 , ALA B:129 , ALA B:349 , ALA B:350 , THR B:353 , ALA B:355 , HOH B:701BINDING SITE FOR RESIDUE GOL B 407
17BC8SOFTWARETHR B:70 , PRO B:199 , THR B:200 , VAL B:201 , PHE B:223 , LEU B:226BINDING SITE FOR RESIDUE DMS B 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GIU)

(-) Exons   (0, 0)

(no "Exon" information available for 4GIU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee.........hhhhhhhhhhhhh...eeeee........hhhhhhhhh......hhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4giu A  24 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363      


Chain B from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee.........hhhhhhhhhhhhh...eeeee........hhhhhhhhhh.....hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4giu B  24 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GIU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GIU)

(-) Gene Ontology  (14, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_MYCTO | P9WFX4: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4gkm 4ij1 4m0r 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv
        TRPD_MYCTU | P9WFX5: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4gkm 4ij1 4m0r 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv 4x58 4x59 4x5a 4x5b 4x5c 4x5d 4x5e 5bne 5byt 5c1r 5c2l 5c7s

(-) Related Entries Specified in the PDB File

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