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(-) Description

Title :  CRYSTAL STRUCTURE OF SSOPOX W263I
 
Authors :  G. Gotthard, J. Hiblot, E. Chabriere, M. Elias
Date :  26 Apr 13  (Deposition) - 02 Oct 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  (Beta/Alpha)8-Hydrolase, Lactonase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hiblot, G. Gotthard, M. Elias, E. Chabriere
Differential Active Site Loop Conformations Mediate Promiscuous Activities In The Lactonase Ssopox.
Plos One V. 8 75272 2013
PubMed-ID: 24086491  |  Reference-DOI: 10.1371/JOURNAL.PONE.0075272

(-) Compounds

Molecule 1 - ARYLDIALKYLPHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.8.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)-PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PHP, PHP SSO2522, SSO2522
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: PARAOXONASE, SSOPOX, PHOSPHOTRIESTERASE-LIKE LACTONASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 33)

Asymmetric Unit (7, 33)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3FE24Ligand/IonFE (II) ION
4GOL11Ligand/IonGLYCEROL
5KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
7PG42Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (5, 14)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3FE22Ligand/IonFE (II) ION
4GOL6Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
7PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (6, 15)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3FE22Ligand/IonFE (II) ION
4GOL5Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
7PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:402 , EDO A:403 , HOH A:699BINDING SITE FOR RESIDUE FE2 A 401
02AC2SOFTWAREKCX A:137 , HIS A:170 , HIS A:199 , ARG A:223 , FE2 A:401 , EDO A:403 , HOH A:699BINDING SITE FOR RESIDUE CO A 402
03AC3SOFTWAREHIS A:24 , TYR A:97 , KCX A:137 , HIS A:170 , ARG A:223 , ASP A:256 , FE2 A:401 , CO A:402 , HOH A:699 , HOH A:706BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREPRO A:4 , LEU A:5 , LYS A:8 , ASP A:9 , SER A:10 , LEU A:130 , ASN A:131 , LYS A:132 , HOH A:552 , HOH A:681 , HOH A:694BINDING SITE FOR RESIDUE GOL A 404
05AC5SOFTWAREASN A:160 , LYS A:164 , GLY A:189 , VAL A:190 , ASP A:191 , HOH A:663 , HOH A:676BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWAREHIS A:120 , GLU A:124 , GLY A:128 , THR A:129 , HOH A:557 , HOH A:581 , HOH A:700 , HOH A:711BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWAREPHE A:104 , TYR C:99 , PG4 C:404BINDING SITE FOR RESIDUE EDO A 407
08AC8SOFTWAREGLU A:298 , HOH A:609 , HOH A:683 , GLN B:58 , HOH B:576BINDING SITE FOR RESIDUE EDO B 401
09AC9SOFTWAREHIS B:22 , HIS B:24 , KCX B:137 , ASP B:256 , CO B:403 , GOL B:404 , HOH B:718BINDING SITE FOR RESIDUE FE2 B 402
10BC1SOFTWAREKCX B:137 , HIS B:170 , HIS B:199 , ARG B:223 , FE2 B:402 , GOL B:404 , HOH B:718BINDING SITE FOR RESIDUE CO B 403
11BC2SOFTWAREHIS B:24 , TYR B:97 , KCX B:137 , HIS B:170 , ARG B:223 , ASP B:256 , FE2 B:402 , CO B:403 , HOH B:718BINDING SITE FOR RESIDUE GOL B 404
12BC3SOFTWAREPRO B:4 , LEU B:5 , LYS B:8 , ASP B:9 , SER B:10 , LEU B:130 , ASN B:131 , LYS B:132 , HOH B:542 , HOH B:685 , HOH B:686 , HOH B:722 , HOH B:729BINDING SITE FOR RESIDUE GOL B 405
13BC4SOFTWAREASN B:160 , LYS B:164 , GLY B:189 , VAL B:190 , ASP B:191 , LYS B:194 , HOH B:636BINDING SITE FOR RESIDUE GOL B 406
14BC5SOFTWAREHIS B:120 , GLU B:124 , GLY B:125 , ILE B:126 , GLN B:127 , GLY B:128 , THR B:129 , LEU B:130 , HOH B:589 , HOH B:656 , LYS D:164 , HOH D:507 , HOH D:703BINDING SITE FOR RESIDUE PEG B 407
15BC6SOFTWAREHIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:402 , HOH C:688BINDING SITE FOR RESIDUE FE2 C 401
16BC7SOFTWAREKCX C:137 , HIS C:170 , HIS C:199 , FE2 C:401 , PG4 C:404 , HOH C:688BINDING SITE FOR RESIDUE CO C 402
17BC8SOFTWAREASP C:214 , GLY C:246 , TYR C:247 , ASP C:249BINDING SITE FOR RESIDUE GOL C 403
18BC9SOFTWAREEDO A:407 , TYR C:97 , HIS C:170 , ARG C:223 , LEU C:226 , ASP C:256 , TRP C:278 , CO C:402 , HOH C:688 , HOH C:707 , HOH C:712BINDING SITE FOR RESIDUE PG4 C 404
19CC1SOFTWAREHIS C:120 , GLU C:124 , GLY C:128 , THR C:129 , HOH C:540 , HOH C:550BINDING SITE FOR RESIDUE GOL C 405
20CC2SOFTWARELEU C:102 , PRO C:103 , PHE C:104 , LEU C:107 , ASP C:148 , HOH C:704 , HOH C:706BINDING SITE FOR RESIDUE EDO C 406
21CC3SOFTWAREASN C:160 , LYS C:164 , GLY C:189 , ASP C:191 , HOH C:599BINDING SITE FOR RESIDUE GOL C 407
22CC4SOFTWAREHIS D:22 , HIS D:24 , KCX D:137 , ASP D:256 , CO D:402 , HOH D:701BINDING SITE FOR RESIDUE FE2 D 401
23CC5SOFTWAREKCX D:137 , HIS D:170 , HIS D:199 , ARG D:223 , FE2 D:401 , PG4 D:404 , HOH D:701BINDING SITE FOR RESIDUE CO D 402
24CC6SOFTWAREILE C:243 , GLY C:295 , VAL C:296 , ASN C:297 , VAL C:300 , GLU D:12 , LYS D:14 , ASP D:15 , HOH D:696 , HOH D:719BINDING SITE FOR RESIDUE EDO D 403
25CC7SOFTWARETYR D:97 , ARG D:223 , ASP D:256 , THR D:265 , ALA D:266 , ALA D:275 , CO D:402 , HOH D:701 , HOH D:704BINDING SITE FOR RESIDUE PG4 D 404
26CC8SOFTWAREASP D:112 , ASP D:116 , ILE D:119 , HOH D:710 , HOH D:722BINDING SITE FOR RESIDUE GOL D 405
27CC9SOFTWAREGLN D:58 , PHE D:59 , HOH D:718BINDING SITE FOR RESIDUE EDO D 406
28DC1SOFTWAREASN D:160 , LYS D:164 , GLY D:189 , VAL D:190 , ASP D:191 , LYS D:194 , HOH D:589 , HOH D:706BINDING SITE FOR RESIDUE GOL D 407
29DC2SOFTWAREASP D:249 , LYS D:250 , LYS D:311 , HOH D:678 , HOH D:702BINDING SITE FOR RESIDUE EDO D 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KET)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KET)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KET)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KET)

(-) Exons   (0, 0)

(no "Exon" information available for 4KET)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4keta_ A: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhh.eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ket A   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDIGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4ketb_ B: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ket B   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDIGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4ketc_ C: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.hhh.eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ket C   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDIGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4ketd_ D: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.hhh.eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ket D   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDIGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KET)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KET)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  4ket
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  PHP_SULSO | Q97VT7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHP_SULSO | Q97VT7: 2vc5 2vc7 3uf9 4ker 4kes 4keu 4kev 4kez 4kf1

(-) Related Entries Specified in the PDB File

2vc5 WILD TYPE SSOPOX
2vc7 WILD TYPE SSOPOX IN COMPLEX WITH LACTONE MIMIC
3uf9 WILD TYPE SSOPOX IN COMPLEX WITH FENSULFOTHION
4ker SSOPOX W263V MUTANT
4kes SSOPOX W263T MUTANT
4keu SSOPOX W263M MUTANT
4kev SSOPOX W263L MUTANT
4kez SSOPOX W263F MUTANT
4kf1 SSOPOX W263I IN COMPLEX WITH C10HTL