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(-) Description

Title :  CRYSTAL STRUCTURE OF SSOPOX W263F
 
Authors :  G. Gotthard, J. Hiblot, E. Chabriere, M. Elias
Date :  26 Apr 13  (Deposition) - 02 Oct 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  (Beta/Alpha)8-Hydrolase, Lactonase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hiblot, G. Gotthard, M. Elias, E. Chabriere
Differential Active Site Loop Conformations Mediate Promiscuous Activities In The Lactonase Ssopox.
Plos One V. 8 75272 2013
PubMed-ID: 24086491  |  Reference-DOI: 10.1371/JOURNAL.PONE.0075272

(-) Compounds

Molecule 1 - ARYLDIALKYLPHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.8.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)-PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PHP, PHP SSO2522, SSO2522
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: PARAOXONASE, SSOPOX, PHOSPHOTRIESTERASE-LIKE LACTONASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 24)

Asymmetric Unit (5, 24)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3FE24Ligand/IonFE (II) ION
4GOL11Ligand/IonGLYCEROL
5KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3FE22Ligand/IonFE (II) ION
4GOL5Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 2 (4, 11)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3FE22Ligand/IonFE (II) ION
4GOL6Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:402 , HOH A:773BINDING SITE FOR RESIDUE FE2 A 401
02AC2SOFTWAREKCX A:137 , HIS A:170 , HIS A:199 , FE2 A:401 , HOH A:773BINDING SITE FOR RESIDUE CO A 402
03AC3SOFTWAREASN A:160 , LYS A:164 , GLY A:189 , VAL A:190 , ASP A:191 , LYS A:194 , HOH A:639BINDING SITE FOR RESIDUE GOL A 403
04AC4SOFTWAREASN A:172 , ALA A:173 , HIS A:174 , ASP A:202 , PHE A:229 , HOH A:535BINDING SITE FOR RESIDUE GOL A 404
05AC5SOFTWAREPRO A:4 , LEU A:5 , LYS A:8 , ASP A:9 , SER A:10 , LEU A:130 , ASN A:131 , LYS A:132 , HOH A:533 , HOH A:660BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWARELEU A:102 , PRO A:103 , PHE A:106 , LEU A:107 , ASP A:148 , LYS A:151 , HOH A:648 , HOH A:679BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWAREHIS B:22 , HIS B:24 , KCX B:137 , ASP B:256 , CO B:402 , HOH B:755BINDING SITE FOR RESIDUE FE2 B 401
08AC8SOFTWAREKCX B:137 , HIS B:170 , HIS B:199 , FE2 B:401 , HOH B:755BINDING SITE FOR RESIDUE CO B 402
09AC9SOFTWAREASN B:160 , LYS B:164 , GLY B:189 , VAL B:190 , ASP B:191 , LYS B:194 , HOH B:617BINDING SITE FOR RESIDUE GOL B 403
10BC1SOFTWARESER B:171 , ASN B:172 , ALA B:173 , HIS B:174 , ASP B:202 , PHE B:229 , HOH B:582BINDING SITE FOR RESIDUE GOL B 404
11BC2SOFTWAREPRO B:4 , LEU B:5 , LYS B:8 , ASP B:9 , SER B:10 , ASN B:131 , LYS B:132 , HOH B:565BINDING SITE FOR RESIDUE GOL B 405
12BC3SOFTWAREHIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:402 , HOH C:753BINDING SITE FOR RESIDUE FE2 C 401
13BC4SOFTWAREKCX C:137 , HIS C:170 , HIS C:199 , FE2 C:401 , EDO C:405 , HOH C:753BINDING SITE FOR RESIDUE CO C 402
14BC5SOFTWAREASN C:160 , LYS C:164 , GLY C:189 , VAL C:190 , ASP C:191 , HOH C:589BINDING SITE FOR RESIDUE GOL C 403
15BC6SOFTWARESER C:171 , ASN C:172 , ALA C:173 , HIS C:174 , ASP C:202 , PHE C:229 , HOH C:547 , HOH C:578BINDING SITE FOR RESIDUE GOL C 404
16BC7SOFTWARETYR C:97 , HIS C:170 , ARG C:223 , CO C:402 , HOH C:663 , HOH C:753BINDING SITE FOR RESIDUE EDO C 405
17BC8SOFTWAREASP C:214 , GLY C:246 , TYR C:247 , ASP C:249 , LYS C:250 , HOH C:677BINDING SITE FOR RESIDUE GOL C 406
18BC9SOFTWAREHIS D:22 , HIS D:24 , KCX D:137 , ASP D:256 , CO D:402 , HOH D:759BINDING SITE FOR RESIDUE FE2 D 401
19CC1SOFTWAREKCX D:137 , HIS D:170 , HIS D:199 , FE2 D:401 , HOH D:759BINDING SITE FOR RESIDUE CO D 402
20CC2SOFTWAREASN D:160 , LYS D:164 , GLY D:189 , ASP D:191 , LYS D:194BINDING SITE FOR RESIDUE GOL D 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KEZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KEZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KEZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KEZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4KEZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4keza_ A: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhh.eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kez A   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDFGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kezb_ B: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhh.eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kez B   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDFGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kezc_ C: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.hhh.eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kez C   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDFGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kezd_ D: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kez D   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDFGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KEZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KEZ)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  PHP_SULSO | Q97VT7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHP_SULSO | Q97VT7: 2vc5 2vc7 3uf9 4ker 4kes 4ket 4keu 4kev 4kf1

(-) Related Entries Specified in the PDB File

2vc5 WILD TYPE SSOPOX
2vc7 WILD TYPE SSOPOX IN COMPLEX WITH LACTONE MIMIC
3uf9 WILD TYPE SSOPOX IN COMPLEX WITH FENSULFOTHION
4ker SSOPOX W263V MUTANT
4kes SSOPOX W263T MUTANT
4ket SSOPOX W263I MUTANT
4keu SSOPOX W263M MUTANT
4kev SSOPOX W263L MUTANT
4kf1 SSOPOX W263I IN COMPLEX WITH C10HTL