Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURAL BASIS FOR NATURAL LACTONASE AND PROMISCUOUS PHOSPHOTRIESTERASE ACTIVITIES
 
Authors :  M. Elias, J. Dupuy, L. Merone, L. Mandrich, S. Moniot, D. Rochu, C. Lecomte, M. Rossi, P. Masson, G. Manco, E. Chabriere
Date :  19 Sep 07  (Deposition) - 15 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Phosphotriesterase, Promiscuous Activities, Enzyme Evolution, Hyperthermophilic, Lactonase, Hydrolase, Biotechnology, Quorum Sensing (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Elias, J. Dupuy, L. Merone, L. Mandrich, E. Porzio, S. Moniot, D. Rochu, C. Lecomte, M. Rossi, P. Masson, G. Manco, E. Chabriere
Structural Basis For Natural Lactonase And Promiscuous Phosphotriesterase Activities.
J. Mol. Biol. V. 379 1017 2008
PubMed-ID: 18486146  |  Reference-DOI: 10.1016/J.JMB.2008.04.022

(-) Compounds

Molecule 1 - ARYLDIALKYLPHOSPHATASE
    ChainsA, B, C, D
    EC Number3.1.8.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid2287
    SynonymPHOSPHOTRIESTERASE, PARAOXONASE, PHP, SSOPOX

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 69)

Asymmetric Unit (6, 69)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2EDO25Ligand/Ion1,2-ETHANEDIOL
3FE4Ligand/IonFE (III) ION
4GOL28Ligand/IonGLYCEROL
5HT54Ligand/Ion(4S)-4-(DECANOYLAMINO)-5-HYDROXY-3,4-DIHYDRO-2H-THIOPHENIUM
6KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 1 (4, 33)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO11Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION
4GOL18Ligand/IonGLYCEROL
5HT52Ligand/Ion(4S)-4-(DECANOYLAMINO)-5-HYDROXY-3,4-DIHYDRO-2H-THIOPHENIUM
6KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 2 (4, 28)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO14Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION
4GOL10Ligand/IonGLYCEROL
5HT52Ligand/Ion(4S)-4-(DECANOYLAMINO)-5-HYDROXY-3,4-DIHYDRO-2H-THIOPHENIUM
6KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID

(-) Sites  (65, 65)

Asymmetric Unit (65, 65)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:1316 , HT5 A:1335 , HOH A:2200BINDING SITE FOR RESIDUE FE A1315
02AC2SOFTWAREKCX A:137 , HIS A:170 , HIS A:199 , FE A:1315 , HT5 A:1335 , HOH A:2200BINDING SITE FOR RESIDUE CO A1316
03AC3SOFTWAREHIS B:22 , HIS B:24 , KCX B:137 , ASP B:256 , CO B:1316 , HT5 B:1328 , HOH B:2161BINDING SITE FOR RESIDUE FE B1315
04AC4SOFTWAREKCX B:137 , HIS B:170 , HIS B:199 , ARG B:223 , FE B:1315 , HT5 B:1328 , HOH B:2161BINDING SITE FOR RESIDUE CO B1316
05AC5SOFTWAREHIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:1316 , HT5 C:1329 , HOH C:2189BINDING SITE FOR RESIDUE FE C1315
06AC6SOFTWAREKCX C:137 , HIS C:170 , HIS C:199 , FE C:1315 , HT5 C:1329 , HOH C:2189BINDING SITE FOR RESIDUE CO C1316
07AC7SOFTWAREHIS D:22 , HIS D:24 , KCX D:137 , ASP D:256 , CO D:1316 , HT5 D:1329 , HOH D:2166BINDING SITE FOR RESIDUE FE D1315
08AC8SOFTWAREKCX D:137 , HIS D:170 , HIS D:199 , ARG D:223 , FE D:1315 , HT5 D:1329 , HOH D:2166BINDING SITE FOR RESIDUE CO D1316
09AC9SOFTWAREPRO A:4 , LEU A:5 , LYS A:8 , ASP A:9 , SER A:10 , ASN A:131 , LYS A:132 , HOH A:2201BINDING SITE FOR RESIDUE GOL A1317
10BC1SOFTWAREASN B:160 , LYS B:164 , GLY B:189 , ASP B:191 , LYS B:194BINDING SITE FOR RESIDUE GOL B1317
11BC2SOFTWAREGLY A:201 , THR A:203 , LEU A:221 , LEU A:230 , ARG A:235 , THR A:238 , THR A:239 , HOH A:2202BINDING SITE FOR RESIDUE EDO A1318
12BC3SOFTWAREASP A:141 , SER A:171 , ASN A:172 , ALA A:173 , HIS A:199 , ASP A:202 , ARG A:223 , PHE A:229BINDING SITE FOR RESIDUE GOL A1319
13BC4SOFTWARELYS A:215 , HOH A:2203 , LYS B:292 , GLY B:295BINDING SITE FOR RESIDUE EDO A1320
14BC5SOFTWARELYS A:8 , LYS A:84 , GLY A:87 , HOH A:2204 , GLU B:187 , GLY B:189BINDING SITE FOR RESIDUE GOL A1321
15BC6SOFTWAREGLU A:298 , GOL A:1324BINDING SITE FOR RESIDUE EDO A1322
16BC7SOFTWAREHOH A:2171 , ASP B:233 , ASN B:236 , PHE B:290BINDING SITE FOR RESIDUE EDO B1318
17BC8SOFTWAREASN C:160 , LYS C:164 , GLY C:189 , VAL C:190 , ASP C:191 , LYS C:194 , HOH C:2117 , HOH C:2191 , HOH C:2192BINDING SITE FOR RESIDUE GOL C1317
18BC9SOFTWAREASN D:160 , LYS D:164 , GLY D:189 , VAL D:190 , ASP D:191BINDING SITE FOR RESIDUE GOL D1317
19CC1SOFTWAREPRO C:4 , LEU C:5 , LYS C:8 , ASP C:9 , SER C:10 , LEU C:130 , ASN C:131 , LYS C:132 , EDO C:1326BINDING SITE FOR RESIDUE EDO C1318
20CC2SOFTWAREASN A:160 , LYS A:164 , GLY A:189 , ASP A:191 , LYS A:194 , EDO A:1331BINDING SITE FOR RESIDUE GOL A1323
21CC3SOFTWAREPHE A:59 , PHE A:284 , EDO A:1322 , HOH A:2206 , GLN C:58 , PHE C:59BINDING SITE FOR RESIDUE GOL A1324
22CC4SOFTWAREILE A:98 , TYR A:99 , ILE A:100 , ASP A:101 , HOH A:2207 , HOH A:2208 , HOH A:2210 , ASP B:101 , LEU B:102 , PHE B:104BINDING SITE FOR RESIDUE GOL A1325
23CC5SOFTWAREPRO D:4 , LEU D:5 , LYS D:8 , ASP D:9 , SER D:10 , ASN D:131 , LYS D:132 , EDO D:1328BINDING SITE FOR RESIDUE EDO D1318
24CC6SOFTWAREALA A:173 , HIS A:174 , ASN A:175 , ASN A:176 , ASN A:205 , TYR A:208 , HOH A:2147BINDING SITE FOR RESIDUE GOL A1326
25CC7SOFTWAREASP A:101 , PHE A:104 , GOL A:1328 , HOH A:2093 , ILE B:98 , TYR B:99 , ILE B:100 , ASP B:101BINDING SITE FOR RESIDUE EDO B1319
26CC8SOFTWARELYS A:8 , ASP A:9 , ILE A:11 , ASN A:89BINDING SITE FOR RESIDUE EDO A1327
27CC9SOFTWAREASP A:101 , LEU A:102 , PRO A:103 , PHE A:104 , HOH A:2091 , HOH A:2211 , EDO B:1319 , HOH B:2065BINDING SITE FOR RESIDUE GOL A1328
28DC1SOFTWARELEU C:5 , LYS C:8 , ASP C:9 , ILE C:11 , ASP C:15 , LYS C:62 , ASN C:89 , HOH C:2193 , HOH C:2194BINDING SITE FOR RESIDUE GOL C1319
29DC2SOFTWAREASP A:101 , LEU A:102 , ASP A:148 , HOH A:2213BINDING SITE FOR RESIDUE GOL A1329
30DC3SOFTWARELYS A:62 , GLY A:87 , ASN A:89BINDING SITE FOR RESIDUE EDO A1330
31DC4SOFTWAREPHE B:18 , GLU B:298BINDING SITE FOR RESIDUE EDO B1320
32DC5SOFTWARELYS A:271 , ARG A:277 , HOH A:2183 , PRO C:289 , ARG C:293 , HOH C:2195BINDING SITE FOR RESIDUE GOL C1320
33DC6SOFTWAREPRO B:4 , LEU B:5 , LYS B:8 , SER B:10 , LEU B:130 , ASN B:131 , LYS B:132BINDING SITE FOR RESIDUE GOL B1321
34DC7SOFTWAREHIS C:120 , GLY C:128 , THR C:129 , HOH C:2197 , LYS D:164BINDING SITE FOR RESIDUE EDO C1321
35DC8SOFTWAREASP B:214 , GLY B:246 , TYR B:247 , ASP B:249 , LYS B:250BINDING SITE FOR RESIDUE GOL B1322
36DC9SOFTWAREGLY B:295 , ASN B:297 , LYS D:14 , ASP D:15BINDING SITE FOR RESIDUE GOL B1323
37EC1SOFTWAREASP B:112 , ASP B:116 , ILE B:119BINDING SITE FOR RESIDUE EDO B1324
38EC2SOFTWAREVAL A:190 , GOL A:1323 , MET D:1 , ASP D:9BINDING SITE FOR RESIDUE EDO A1331
39EC3SOFTWAREHIS C:38 , HOH C:2199 , HOH C:2200 , HIS D:120BINDING SITE FOR RESIDUE EDO C1322
40EC4SOFTWARELYS C:62 , GLY C:87 , ASN C:89BINDING SITE FOR RESIDUE EDO C1323
41EC5SOFTWAREASP D:214 , GLY D:246 , ASP D:249 , LYS D:250BINDING SITE FOR RESIDUE EDO D1319
42EC6SOFTWAREPHE D:59 , LYS D:292 , GLU D:298 , HOH D:2167BINDING SITE FOR RESIDUE GOL D1320
43EC7SOFTWAREARG A:55 , GLN A:58 , HOH A:2215 , PHE C:18 , ILE C:288 , GLU C:298BINDING SITE FOR RESIDUE GOL A1332
44EC8SOFTWAREGLY B:295 , ASN B:297 , MET D:1 , ILE D:11 , GLU D:12 , ASP D:15BINDING SITE FOR RESIDUE GOL B1325
45EC9SOFTWARETYR A:99 , HIS A:170 , ARG A:223 , TRP A:263 , HT5 A:1335 , HOH A:2216 , HOH A:2217BINDING SITE FOR RESIDUE GOL A1333
46FC1SOFTWAREMET A:1 , ARG A:2 , GLU C:162 , LYS C:164BINDING SITE FOR RESIDUE GOL A1334
47FC2SOFTWARELYS B:244 , MET C:1 , LYS D:14BINDING SITE FOR RESIDUE EDO B1326
48FC3SOFTWAREASP C:101 , LEU C:102 , PHE C:104 , ILE D:98 , TYR D:99 , ILE D:100 , ASP D:101 , HOH D:2169 , HOH D:2171BINDING SITE FOR RESIDUE GOL D1321
49FC4SOFTWAREGLU C:80 , LYS C:81 , LYS C:84 , HOH C:2201BINDING SITE FOR RESIDUE GOL C1324
50FC5SOFTWAREASN D:172 , ALA D:173 , HIS D:174 , ASP D:202 , PHE D:229 , HOH D:2172BINDING SITE FOR RESIDUE EDO D1322
51FC6SOFTWARETYR C:99 , ASP C:141 , GLU C:142 , HIS C:170 , ARG C:223 , PHE C:229 , HT5 C:1329BINDING SITE FOR RESIDUE GOL C1325
52FC7SOFTWAREMET C:1 , ARG C:2 , EDO C:1318BINDING SITE FOR RESIDUE EDO C1326
53FC8SOFTWAREASN B:172 , ALA B:173 , HIS B:174 , ASP B:202 , ARG B:223 , PHE B:229 , HOH B:2089 , HOH B:2162BINDING SITE FOR RESIDUE GOL B1327
54FC9SOFTWARETYR D:99 , TRP D:263 , HOH D:2173BINDING SITE FOR RESIDUE EDO D1323
55GC1SOFTWAREGLN C:34 , ARG D:26 , PHE D:28 , ARG D:33 , GLU D:42 , ASP D:75 , EDO D:1325BINDING SITE FOR RESIDUE GOL D1324
56GC2SOFTWAREARG D:33 , PRO D:37 , GOL D:1324BINDING SITE FOR RESIDUE EDO D1325
57GC3SOFTWARELYS C:311 , HOH C:2204 , GLU D:237 , ASN D:294BINDING SITE FOR RESIDUE GOL C1327
58GC4SOFTWAREASN D:48 , ASN D:51 , GLU D:52 , HOH D:2175BINDING SITE FOR RESIDUE EDO D1326
59GC5SOFTWARESER C:171 , ASN C:172 , ALA C:173 , ASP C:202 , HOH C:2121BINDING SITE FOR RESIDUE EDO C1328
60GC6SOFTWAREGLU D:42 , ASP D:43 , LYS D:81 , HOH D:2176BINDING SITE FOR RESIDUE EDO D1327
61GC7SOFTWARELYS D:8 , ASN D:131 , EDO D:1318BINDING SITE FOR RESIDUE EDO D1328
62GC8SOFTWARELEU C:72 , TYR C:97 , KCX C:137 , HIS C:170 , ARG C:223 , ILE C:261 , TRP C:263 , THR C:265 , ALA C:266 , LYS C:271 , FE C:1315 , CO C:1316 , GOL C:1325 , HOH C:2189BINDING SITE FOR RESIDUE HT5 C1329
63GC9SOFTWAREHIS A:24 , TYR A:97 , KCX A:137 , HIS A:170 , ARG A:223 , LEU A:226 , PHE A:229 , ASP A:256 , TRP A:263 , ALA A:266 , TRP A:278 , FE A:1315 , CO A:1316 , GOL A:1333 , HOH A:2200BINDING SITE FOR RESIDUE HT5 A1335
64HC1SOFTWAREHIS B:24 , TYR B:97 , KCX B:137 , HIS B:170 , ARG B:223 , LEU B:226 , LEU B:228 , PHE B:229 , CYS B:258 , ILE B:261 , TRP B:263 , THR B:265 , LYS B:271 , FE B:1315 , CO B:1316 , HOH B:2161BINDING SITE FOR RESIDUE HT5 B1328
65HC2SOFTWAREVAL D:27 , LEU D:72 , TYR D:97 , KCX D:137 , HIS D:170 , ARG D:223 , LEU D:226 , PHE D:229 , ASP D:256 , CYS D:258 , ILE D:261 , THR D:265 , ALA D:266 , FE D:1315 , CO D:1316 , HOH D:2166BINDING SITE FOR RESIDUE HT5 D1329

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VC7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys C:292 -Arg C:293

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VC7)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHOTRIESTERASE_2PS51347 Phosphotriesterase family profile.PHP_SULSO2-314
 
 
 
  4A:2-314
B:2-314
C:2-314
D:2-314
2PHOSPHOTRIESTERASE_1PS01322 Phosphotriesterase family signature 1.PHP_SULSO17-25
 
 
 
  4A:17-25
B:17-25
C:17-25
D:17-25
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHOTRIESTERASE_2PS51347 Phosphotriesterase family profile.PHP_SULSO2-314
 
 
 
  2A:2-314
B:2-314
-
-
2PHOSPHOTRIESTERASE_1PS01322 Phosphotriesterase family signature 1.PHP_SULSO17-25
 
 
 
  2A:17-25
B:17-25
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHOTRIESTERASE_2PS51347 Phosphotriesterase family profile.PHP_SULSO2-314
 
 
 
  2-
-
C:2-314
D:2-314
2PHOSPHOTRIESTERASE_1PS01322 Phosphotriesterase family signature 1.PHP_SULSO17-25
 
 
 
  2-
-
C:17-25
D:17-25

(-) Exons   (0, 0)

(no "Exon" information available for 2VC7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc7a_ A: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhh..hhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: A:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc7 A   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc7b_ B: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.....eee................hhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: B:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc7 B   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc7c_ C: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhh..hhhhhh.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: C:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc7 C   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             

Chain D from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc7d_ D: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------PTE-2vc7D01 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) ----------PTE-2vc7D02 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (2)
           Pfam domains (3) ----------PTE-2vc7D03 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (3)
           Pfam domains (4) ----------PTE-2vc7D04 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (4)
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhh..hhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: D:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc7 D   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VC7)

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PHP_SULSO | Q97VT7)
molecular function
    GO:0004063    aryldialkylphosphatase activity    Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009056    catabolic process    The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HT5  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KCX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
    GC5  [ RasMol ]  +environment [ RasMol ]
    GC6  [ RasMol ]  +environment [ RasMol ]
    GC7  [ RasMol ]  +environment [ RasMol ]
    GC8  [ RasMol ]  +environment [ RasMol ]
    GC9  [ RasMol ]  +environment [ RasMol ]
    HC1  [ RasMol ]  +environment [ RasMol ]
    HC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Lys C:292 - Arg C:293   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2vc7
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PHP_SULSO | Q97VT7
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.1.8.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PHP_SULSO | Q97VT7
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHP_SULSO | Q97VT72vc5 3uf9 4ker 4kes 4ket 4keu 4kev 4kez 4kf1

(-) Related Entries Specified in the PDB File

2vc5 STRUCTURAL BASIS FOR NATURAL LACTONASE AND PROMISCUOUS PHOSPHOTRIESTERASE ACTIVITIES