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(-) Description

Title :  CRYSTAL STRUCTURE OF SSOPOX W263V
 
Authors :  G. Gotthard, J. Hiblot, E. Chabriere, M. Elias
Date :  26 Apr 13  (Deposition) - 02 Oct 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  (Beta/Alpha)8-Hydrolase, Lactonase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hiblot, G. Gotthard, M. Elias, E. Chabriere
Differential Active Site Loop Conformations Mediate Promiscuous Activities In The Lactonase Ssopox.
Plos One V. 8 75272 2013
PubMed-ID: 24086491  |  Reference-DOI: 10.1371/JOURNAL.PONE.0075272

(-) Compounds

Molecule 1 - ARYLDIALKYLPHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.8.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B-W263V
    Expression System Strain: BL21(DE3)-PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PHP, PHP SSO2522, SSO2522
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: PARAOXONASE, SSOPOX, PHOSPHOTRIESTERASE-LIKE LACTONASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 30)

Asymmetric Unit (6, 30)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3FE24Ligand/IonFE (II) ION
4GOL10Ligand/IonGLYCEROL
5KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (5, 13)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3FE22Ligand/IonFE (II) ION
4GOL4Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (4, 13)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3FE22Ligand/IonFE (II) ION
4GOL6Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:402 , HOH A:599BINDING SITE FOR RESIDUE FE2 A 401
02AC2SOFTWAREKCX A:137 , HIS A:170 , HIS A:199 , ARG A:223 , FE2 A:401 , HOH A:599BINDING SITE FOR RESIDUE CO A 402
03AC3SOFTWARESER A:171 , ASN A:172 , ALA A:173 , ASP A:202 , PHE A:229 , HOH A:544BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREASN A:160 , LYS A:164 , GLY A:189 , ASP A:191 , HOH A:579BINDING SITE FOR RESIDUE GOL A 404
05AC5SOFTWAREHIS A:120 , GLY A:125 , GLY A:128 , THR A:129 , LEU A:130 , LYS C:164BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWAREASP A:256 , CYS A:258 , HOH A:599BINDING SITE FOR RESIDUE PEG A 406
07AC7SOFTWAREHIS B:22 , HIS B:24 , KCX B:137 , ASP B:256 , CO B:402 , GOL B:406 , HOH B:539BINDING SITE FOR RESIDUE FE2 B 401
08AC8SOFTWAREKCX B:137 , HIS B:170 , HIS B:199 , FE2 B:401 , GOL B:406 , HOH B:539BINDING SITE FOR RESIDUE CO B 402
09AC9SOFTWARELEU B:25 , ARG B:26 , ASP B:66 , THR B:68 , GLY B:73 , ASP B:75BINDING SITE FOR RESIDUE EDO B 403
10BC1SOFTWAREASN B:172 , ALA B:173 , ASP B:202 , HOH B:561BINDING SITE FOR RESIDUE GOL B 404
11BC2SOFTWAREASN B:160 , LYS B:164 , GLY B:189 , ASP B:191BINDING SITE FOR RESIDUE GOL B 405
12BC3SOFTWAREHIS B:24 , TYR B:97 , KCX B:137 , HIS B:170 , ARG B:223 , ASP B:256 , CYS B:258 , FE2 B:401 , CO B:402 , HOH B:539BINDING SITE FOR RESIDUE GOL B 406
13BC4SOFTWAREHIS B:120 , GLY B:128 , THR B:129 , HOH B:532BINDING SITE FOR RESIDUE GOL B 407
14BC5SOFTWAREHIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:402 , HOH C:583BINDING SITE FOR RESIDUE FE2 C 401
15BC6SOFTWAREKCX C:137 , HIS C:170 , HIS C:199 , ARG C:223 , FE2 C:401 , GOL C:404 , HOH C:583BINDING SITE FOR RESIDUE CO C 402
16BC7SOFTWARESER C:171 , ASN C:172 , ALA C:173 , HIS C:174 , ASP C:202 , PHE C:229 , HOH C:515BINDING SITE FOR RESIDUE EDO C 403
17BC8SOFTWAREARG C:223 , ASP C:256 , CYS C:258 , ILE C:261 , CO C:402 , EDO C:407 , HOH C:583BINDING SITE FOR RESIDUE GOL C 404
18BC9SOFTWAREARG A:77 , ASN C:160 , LYS C:164 , GLY C:189 , VAL C:190 , ASP C:191BINDING SITE FOR RESIDUE GOL C 405
19CC1SOFTWAREHOH C:519 , HOH C:525BINDING SITE FOR RESIDUE EDO C 406
20CC2SOFTWARETHR C:265 , ALA C:266 , GOL C:404BINDING SITE FOR RESIDUE EDO C 407
21CC3SOFTWAREHIS D:22 , HIS D:24 , KCX D:137 , ASP D:256 , CO D:402 , HOH D:586BINDING SITE FOR RESIDUE FE2 D 401
22CC4SOFTWAREKCX D:137 , HIS D:170 , HIS D:199 , FE2 D:401 , HOH D:586 , HOH D:588BINDING SITE FOR RESIDUE CO D 402
23CC5SOFTWARESER D:171 , ALA D:173 , HIS D:174 , ASP D:202 , PHE D:229 , HOH D:507 , HOH D:549BINDING SITE FOR RESIDUE EDO D 403
24CC6SOFTWAREPRO D:4 , LEU D:5 , LYS D:8 , ASP D:9 , SER D:10 , LEU D:130 , ASN D:131 , LYS D:132BINDING SITE FOR RESIDUE GOL D 404
25CC7SOFTWAREASN D:160 , LYS D:164 , GLY D:189 , ASP D:191 , LYS D:194BINDING SITE FOR RESIDUE GOL D 405
26CC8SOFTWAREGLY D:128 , THR D:129 , HOH D:508BINDING SITE FOR RESIDUE EDO D 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KER)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KER)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KER)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KER)

(-) Exons   (0, 0)

(no "Exon" information available for 4KER)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kera_ A: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ker A   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDVGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kerb_ B: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhh.............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ker B   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDVGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kerc_ C: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eeeehhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.hhh.eee.........hhhhh..hhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ker C   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDVGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4kerd_ D: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhh.eee................hhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ker D   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDVGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KER)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KER)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  4ker
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  PHP_SULSO | Q97VT7
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  3.1.8.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHP_SULSO | Q97VT7: 2vc5 2vc7 3uf9 4kes 4ket 4keu 4kev 4kez 4kf1

(-) Related Entries Specified in the PDB File

2vc5 WILD TYPE SSOPOX
2vc7 WILD TYPE SSOPOX IN COMPLEX WITH LACTONE MIMIC
3uf9 WILD TYPE SSOPOX IN COMPLEX WITH FENSULFOTHION
4kes SSOPOX W263T MUTANT
4ket SSOPOX W263I MUTANT
4keu SSOPOX W263M MUTANT
4kev SSOPOX W263L MUTANT
4kez SSOPOX W263F MUTANT
4kf1 SSOPOX W263I IN COMPLEX WITH C10HTL