Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURAL BASIS FOR NATURAL LACTONASE AND PROMISCUOUS PHOSPHOTRIESTERASE ACTIVITIES
 
Authors :  M. Elias, J. Dupuy, L. Merone, L. Mandrich, S. Moniot, C. Lecomte, M. Rossi, P. Masson, G. Manco, E. Chabriere
Date :  18 Sep 07  (Deposition) - 15 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Phosphotriesterase, Promiscuous Activities, Enzyme Evolution, Hyperthermophilic, Lactonase, Hydrolase, Biotechnology, Quorum Sensing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Elias, J. Dupuy, L. Merone, L. Mandrich, E. Porzio, S. Moniot, D. Rochu, C. Lecomte, M. Rossi, P. Masson, G. Manco, E. Chabriere
Structural Basis For Natural Lactonase And Promiscuous Phosphotriesterase Activities.
J. Mol. Biol. V. 379 1017 2008
PubMed-ID: 18486146  |  Reference-DOI: 10.1016/J.JMB.2008.04.022
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ARYLDIALKYLPHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.8.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: SSOPOX, PHOSPHOTRIESTERASE, PARAOXONASE, PHP

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 33)

Asymmetric Unit (5, 33)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2EDO15Ligand/Ion1,2-ETHANEDIOL
3FE4Ligand/IonFE (III) ION
4GOL6Ligand/IonGLYCEROL
5KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO8Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION
4GOL5Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2EDO7Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION
4GOL1Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:1316 , HOH A:2064BINDING SITE FOR RESIDUE FE A1315
02AC2SOFTWAREKCX A:137 , HIS A:170 , HIS A:199 , ARG A:223 , FE A:1315 , HOH A:2064BINDING SITE FOR RESIDUE CO A1316
03AC3SOFTWAREHIS B:22 , HIS B:24 , KCX B:137 , ASP B:256 , CO B:1316 , HOH B:2062BINDING SITE FOR RESIDUE FE B1315
04AC4SOFTWAREKCX B:137 , HIS B:170 , HIS B:199 , ARG B:223 , FE B:1315 , HOH B:2062BINDING SITE FOR RESIDUE CO B1316
05AC5SOFTWAREHIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:1316 , HOH C:2056BINDING SITE FOR RESIDUE FE C1315
06AC6SOFTWAREKCX C:137 , HIS C:170 , HIS C:199 , ARG C:223 , FE C:1315 , HOH C:2013 , HOH C:2056BINDING SITE FOR RESIDUE CO C1316
07AC7SOFTWAREHIS D:22 , HIS D:24 , KCX D:137 , ASP D:256 , CO D:1316 , HOH D:2061BINDING SITE FOR RESIDUE FE D1315
08AC8SOFTWAREKCX D:137 , HIS D:170 , HIS D:199 , ARG D:223 , FE D:1315 , HOH D:2061BINDING SITE FOR RESIDUE CO D1316
09AC9SOFTWARETYR A:99 , ILE A:100 , ASP A:101 , PHE B:104 , EDO B:1321BINDING SITE FOR RESIDUE EDO A1317
10BC1SOFTWAREASN D:172 , ALA D:173 , HIS D:174 , ASP D:202 , PHE D:229 , HOH D:2045BINDING SITE FOR RESIDUE EDO D1317
11BC2SOFTWAREASN C:160 , LYS C:164 , GLY C:189 , ASP C:191BINDING SITE FOR RESIDUE EDO C1317
12BC3SOFTWAREPHE C:104 , TYR D:99 , ILE D:100 , ASP D:101BINDING SITE FOR RESIDUE EDO D1318
13BC4SOFTWARETYR B:257 , CYS B:258 , ILE B:261 , ALA B:266 , LYS B:271BINDING SITE FOR RESIDUE EDO B1317
14BC5SOFTWAREASN A:160 , LYS A:164 , GLY A:189 , ASP A:191 , LYS A:194BINDING SITE FOR RESIDUE GOL A1318
15BC6SOFTWAREASN B:160 , LYS B:164 , GLY B:189 , VAL B:190 , ASP B:191BINDING SITE FOR RESIDUE GOL B1318
16BC7SOFTWAREASN D:160 , LYS D:164 , GLY D:189 , VAL D:190 , ASP D:191BINDING SITE FOR RESIDUE GOL D1319
17BC8SOFTWARESER B:171 , ASN B:172 , ALA B:173 , ASP B:202 , ARG B:223 , PHE B:229BINDING SITE FOR RESIDUE GOL B1319
18BC9SOFTWAREPHE A:104 , ILE B:98 , TYR B:99 , ILE B:100 , ASP B:101 , EDO B:1321BINDING SITE FOR RESIDUE GOL B1320
19CC1SOFTWARELYS A:14 , GLY A:17BINDING SITE FOR RESIDUE EDO A1319
20CC2SOFTWAREGLY D:128 , THR D:129BINDING SITE FOR RESIDUE EDO D1320
21CC3SOFTWARELEU A:5 , ASP A:9 , SER A:10 , ASN A:131 , LYS A:132BINDING SITE FOR RESIDUE EDO A1320
22CC4SOFTWAREEDO A:1317 , ASP B:101 , LEU B:102 , PHE B:104 , GOL B:1320 , EDO B:1323BINDING SITE FOR RESIDUE EDO B1321
23CC5SOFTWARELEU C:39 , ILE C:261BINDING SITE FOR RESIDUE EDO C1318
24CC6SOFTWAREALA B:266 , TRP B:278BINDING SITE FOR RESIDUE EDO B1322
25CC7SOFTWARELEU B:102 , PRO B:103 , LEU B:107 , ASP B:148 , EDO B:1321BINDING SITE FOR RESIDUE EDO B1323
26CC8SOFTWAREASP A:141 , SER A:171 , ASN A:172 , ALA A:173 , ASP A:202 , ARG A:223 , PHE A:229BINDING SITE FOR RESIDUE GOL A1321
27CC9SOFTWARETYR C:99 , ILE C:100 , ASP C:101 , PHE D:104BINDING SITE FOR RESIDUE EDO C1319
28DC1SOFTWARESER A:29 , GLY A:71 , PRO B:103 , PHE B:104BINDING SITE FOR RESIDUE EDO B1324
29DC2SOFTWAREALA D:266BINDING SITE FOR RESIDUE EDO D1321

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VC5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VC5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VC5)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHOTRIESTERASE_2PS51347 Phosphotriesterase family profile.PHP_SULSO2-314
 
 
 		  4A:2-314
B:2-314
C:2-314
D:2-314
2PHOSPHOTRIESTERASE_1PS01322 Phosphotriesterase family signature 1.PHP_SULSO17-25
 
 
 		  4A:17-25
B:17-25
C:17-25
D:17-25
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHOTRIESTERASE_2PS51347 Phosphotriesterase family profile.PHP_SULSO2-314
 
 
 		  2A:2-314
B:2-314
-
-
2PHOSPHOTRIESTERASE_1PS01322 Phosphotriesterase family signature 1.PHP_SULSO17-25
 
 
 		  2A:17-25
B:17-25
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHOTRIESTERASE_2PS51347 Phosphotriesterase family profile.PHP_SULSO2-314
 
 
 		  2-
-
C:2-314
D:2-314
2PHOSPHOTRIESTERASE_1PS01322 Phosphotriesterase family signature 1.PHP_SULSO17-25
 
 
 		  2-
-
C:17-25
D:17-25

(-) Exons   (0, 0)

(no "Exon" information available for 2VC5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc5a_ A: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhh...eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: A:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc5 A   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc5b_ B: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeee.hhhhh.ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhh.eee..eee......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: B:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc5 B   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc5c_ C: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee........hhhhhhhhhhhhh.eeee.ee.......hhhhh..hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.......hhhhhhhhhhh..eeee.........hhhhhhhhhhhhh.......eee...........................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: C:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc5 C   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:314
 aligned with PHP_SULSO | Q97VT7 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
            PHP_SULSO     1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
               SCOP domains d2vc5d_ D: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------PTE-2vc5D01 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (1)
           Pfam domains (2) ----------PTE-2vc5D02 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (2)
           Pfam domains (3) ----------PTE-2vc5D03 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (3)
           Pfam domains (4) ----------PTE-2vc5D04 D:11-314                                                                                                                                                                                                                                                                                             Pfam domains (4)
         Sec.struct. author ..eee..eeeehhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhh....eeee.eee......hhhhh..hhhhhhhhhhhhhhh...........eee.......hhhhhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhh..hhh.eee.............hhhhhhhhh.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PHOSPHOTRIESTERASE_2  PDB: D:2-314 UniProt: 2-314                                                                                                                                                                                                                                                                         PROSITE (1)
                PROSITE (2) ----------------PHOSPHOTR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vc5 D   1 MRIPLVGKDSIESKDIGFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVkIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                  137-KCX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VC5)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Amidohydrolase (126)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PHP_SULSO | Q97VT7)
molecular function
    GO:0004063    aryldialkylphosphatase activity    Catalysis of the reaction: aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009056    catabolic process    The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KCX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2vc5)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2vc5
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PHP_SULSO | Q97VT7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.1.8.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PHP_SULSO | Q97VT7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHP_SULSO | Q97VT7: 2vc7 3uf9 4ker 4kes 4ket 4keu 4kev 4kez 4kf1

(-) Related Entries Specified in the PDB File

2vc7 STRUCTURAL BASIS FOR NATURAL LACTONASE AND PROMISCUOUS PHOSPHOTRIESTERASE ACTIVITIES