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(-) Description

Title :  MUS MUSCULUS TDP2-DNA SUBSTRATE ANALOG (5'-6-AMINOHEXANOL) COMPLEX
 
Authors :  M. J. Schellenberg, R. S. Williams
Date :  05 Sep 12  (Deposition) - 31 Oct 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Protein-Dna Complex, Dna Repair, 5'-Dna End Processing, Endonuclease/Exonuclease/Phosphatase Domain, Eep Domain, 5'-Dna End Recognition, Eep, Endonuclease/Exonuclease/Phosphatase Domain, 5'-End Recognition, Nuclear, Hydrolase, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Schellenberg, C. D. Appel, S. Adhikari, P. D. Robertson, D. A. Ramsden, R. S. Williams
Mechanism Of Repair Of 5'-Topoisomerase Ii-Dna Adducts By Mammalian Tyrosyl-Dna Phosphodiesterase 2.
Nat. Struct. Mol. Biol. V. 19 1363 2012
PubMed-ID: 23104055  |  Reference-DOI: 10.1038/NSMB.2418

(-) Compounds

Molecule 1 - TYROSYL-DNA PHOSPHODIESTERASE 2
    Chains: A, B, E, K, G, I
    EC Number: 3.1.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG9
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 118-370
    Gene: TDP2, TTRAP
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: TYR-DNA PHOSPHODIESTERASE 2, 5'-TYROSYL-DNA PHOSPHODIESTERASE, 5'-TYR-DNA PHOSPHODIESTERASE, TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN
 
Molecule 2 - DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3')
    Chains: C, D, F, L, H, J
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): A  D        
Biological Unit 2 (1x):  BC         
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 141)

Asymmetric Unit (3, 141)
No.NameCountTypeFull Name
16AH6Ligand/Ion6-AMINOHEXAN-1-OL
2ACT22Ligand/IonACETATE ION
3EDO113Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (3, 31)
No.NameCountTypeFull Name
16AH1Ligand/Ion6-AMINOHEXAN-1-OL
2ACT5Ligand/IonACETATE ION
3EDO25Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (3, 26)
No.NameCountTypeFull Name
16AH1Ligand/Ion6-AMINOHEXAN-1-OL
2ACT3Ligand/IonACETATE ION
3EDO22Ligand/Ion1,2-ETHANEDIOL
Biological Unit 3 (3, 26)
No.NameCountTypeFull Name
16AH1Ligand/Ion6-AMINOHEXAN-1-OL
2ACT4Ligand/IonACETATE ION
3EDO21Ligand/Ion1,2-ETHANEDIOL
Biological Unit 4 (3, 18)
No.NameCountTypeFull Name
16AH1Ligand/Ion6-AMINOHEXAN-1-OL
2ACT3Ligand/IonACETATE ION
3EDO14Ligand/Ion1,2-ETHANEDIOL
Biological Unit 5 (3, 22)
No.NameCountTypeFull Name
16AH1Ligand/Ion6-AMINOHEXAN-1-OL
2ACT4Ligand/IonACETATE ION
3EDO17Ligand/Ion1,2-ETHANEDIOL
Biological Unit 6 (3, 18)
No.NameCountTypeFull Name
16AH1Ligand/Ion6-AMINOHEXAN-1-OL
2ACT3Ligand/IonACETATE ION
3EDO14Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (139, 139)

Asymmetric Unit (139, 139)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREGLU A:333 , GLY A:335 , HIS A:336 , LEU A:337BINDING SITE FOR RESIDUE EDO A 401
002AC2SOFTWAREASP A:277 , TRP A:294 , GLN A:304 , TYR A:305 , ARG A:324 , HOH A:605BINDING SITE FOR RESIDUE EDO A 402
003AC3SOFTWARETYR A:188 , MET A:214 , HOH A:642 , EDO H:102 , HOH H:201BINDING SITE FOR RESIDUE EDO A 403
004AC4SOFTWAREEDO A:409 , HOH A:527 , GLU G:348 , LYS G:349BINDING SITE FOR RESIDUE EDO A 404
005AC5SOFTWAREPHE A:209 , PRO A:210 , ASN A:211 , THR A:212 , GLU A:246 , ARG A:249BINDING SITE FOR RESIDUE EDO A 405
006AC6SOFTWARESER A:341 , HOH A:575 , SER G:148BINDING SITE FOR RESIDUE EDO A 406
007AC7SOFTWARECYS A:149 , GLU A:348 , ACT A:427 , TYR G:153 , ASP G:343 , LEU G:344BINDING SITE FOR RESIDUE EDO A 407
008AC8SOFTWARETHR A:179 , LYS A:196 , VAL A:199 , PHE A:201 , HOH A:593BINDING SITE FOR RESIDUE EDO A 408
009AC9SOFTWAREGLN A:304 , TYR A:305 , ASP A:308 , ALA A:311 , LEU A:344 , TRP A:360 , EDO A:404BINDING SITE FOR RESIDUE EDO A 409
010BC1SOFTWAREACT A:423 , HOH A:575BINDING SITE FOR RESIDUE EDO A 410
011BC2SOFTWARETYR A:153 , HOH A:501 , CYS G:149 , LEU G:152 , TYR G:153 , GLU G:348BINDING SITE FOR RESIDUE EDO A 411
012BC3SOFTWARETRP A:307 , ASP A:308 , THR A:309 , ASN A:312 , ASN A:314 , LEU A:315 , ASP A:358BINDING SITE FOR RESIDUE EDO A 412
013BC4SOFTWAREALA A:311 , ASN A:313 , LYS A:349BINDING SITE FOR RESIDUE EDO A 413
014BC5SOFTWARELEU A:152 , TYR A:153 , ACT A:423 , HOH A:594 , HOH A:689 , LEU G:152 , TYR G:153 , EDO G:407BINDING SITE FOR RESIDUE EDO A 414
015BC6SOFTWARETHR A:309 , ILE A:317 , PRO A:318BINDING SITE FOR RESIDUE EDO A 415
016BC7SOFTWAREASN A:138 , CYS A:352BINDING SITE FOR RESIDUE EDO A 416
017BC8SOFTWAREGLY A:227 , ASN A:228 , LEU A:370 , HOH A:666 , ARG E:144BINDING SITE FOR RESIDUE EDO A 417
018BC9SOFTWARELEU A:347 , GLU A:348 , LYS A:349 , HOH A:509 , EDO G:405BINDING SITE FOR RESIDUE EDO A 418
019CC1SOFTWAREILE I:206BINDING SITE FOR RESIDUE EDO A 419
020CC2SOFTWAREGLY A:183 , ASN A:184 , GLN I:204BINDING SITE FOR RESIDUE EDO A 421
021CC3SOFTWARELEU A:350 , HOH A:509 , LYS G:301BINDING SITE FOR RESIDUE EDO A 422
022CC4SOFTWARESER A:125 , TYR A:153 , PRO A:155 , LEU A:363 , EDO A:410 , EDO A:414 , HOH A:601 , LEU G:152BINDING SITE FOR RESIDUE ACT A 423
023CC5SOFTWAREHIS A:302 , ASP A:343 , HOH A:528 , ARG G:144 , GLY G:145 , SER G:148 , HOH G:522BINDING SITE FOR RESIDUE ACT A 424
024CC6SOFTWAREARG A:144 , GLY A:145 , SER A:148 , GLU A:348 , HOH A:539 , HIS G:302 , ASP G:343BINDING SITE FOR RESIDUE ACT A 425
025CC7SOFTWARETYR A:170 , HOH A:650 , GLY E:226 , ASN E:228 , LEU E:370 , HOH E:667BINDING SITE FOR RESIDUE ACT A 426
026CC8SOFTWARECYS A:149 , TYR A:153 , LEU A:344 , VAL A:345 , GLY A:346 , LEU A:347 , EDO A:407BINDING SITE FOR RESIDUE ACT A 427
027CC9SOFTWARETRP B:307 , ASP B:308 , ASN B:312 , ASN B:314 , LEU B:315 , ASP B:358BINDING SITE FOR RESIDUE EDO B 401
028DC1SOFTWAREPHE B:209 , PRO B:210 , ASN B:211 , THR B:212 , GLU B:246 , ARG B:249BINDING SITE FOR RESIDUE EDO B 402
029DC2SOFTWARECYS B:149 , TYR B:153 , LEU B:344 , VAL B:345 , GLY B:346 , LEU B:347 , EDO I:414 , ACT I:419BINDING SITE FOR RESIDUE EDO B 403
030DC3SOFTWARESER B:341 , EDO B:406 , SER I:148BINDING SITE FOR RESIDUE EDO B 404
031DC4SOFTWARESER B:125 , TYR B:153 , EDO B:406 , HOH B:573 , LEU I:152BINDING SITE FOR RESIDUE EDO B 405
032DC5SOFTWARETHR B:123 , EDO B:404 , EDO B:405 , HOH B:619 , ALA I:151BINDING SITE FOR RESIDUE EDO B 406
033DC6SOFTWAREARG B:144 , GLU B:348 , HIS I:302 , ASP I:343BINDING SITE FOR RESIDUE EDO B 408
034DC7SOFTWAREGLU B:205 , ILE B:206 , THR G:253BINDING SITE FOR RESIDUE EDO B 409
035DC8SOFTWAREARG B:241 , GLU B:279 , HOH B:597 , HOH B:639BINDING SITE FOR RESIDUE EDO B 410
036DC9SOFTWAREARG B:198 , LYS B:200 , SER B:224 , LEU B:225 , GLY B:226 , GLY B:227 , HOH B:602BINDING SITE FOR RESIDUE EDO B 411
037EC1SOFTWARELEU B:286 , PRO B:287 , VAL B:290 , PHE B:291 , HOH B:528BINDING SITE FOR RESIDUE EDO B 412
038EC2SOFTWARETYR B:188BINDING SITE FOR RESIDUE EDO B 413
039EC3SOFTWAREHIS B:302 , SER B:341 , LEU B:342 , HOH I:578BINDING SITE FOR RESIDUE EDO B 414
040EC4SOFTWARETYR B:178 , THR B:179 , ILE B:180 , LYS B:196BINDING SITE FOR RESIDUE EDO B 415
041EC5SOFTWAREPRO B:165 , PRO B:166 , ALA B:169BINDING SITE FOR RESIDUE EDO B 416
042EC6SOFTWAREASN B:184 , MET B:215 , ASN B:217 , HOH B:576 , GLU G:260BINDING SITE FOR RESIDUE EDO B 417
043EC7SOFTWAREARG B:144 , SER B:148 , ARG B:174BINDING SITE FOR RESIDUE EDO B 418
044EC8SOFTWARECYS B:147 , ALA B:151 , ARG B:174 , ALA B:175 , SER B:177 , TYR B:178 , HOH B:521 , HOH B:559BINDING SITE FOR RESIDUE EDO B 419
045EC9SOFTWARELEU B:297 , GLY B:298 , HOH B:584 , HOH B:586 , GLN E:278 , LYS E:282BINDING SITE FOR RESIDUE EDO B 420
046FC1SOFTWARETYR B:305 , LYS B:322BINDING SITE FOR RESIDUE EDO B 421
047FC2SOFTWARECYS B:168 , GLU B:185 , PHE B:189BINDING SITE FOR RESIDUE EDO B 422
048FC3SOFTWARETHR B:179 , LEU B:194 , LYS B:196 , VAL B:199 , PHE B:201 , HOH B:558BINDING SITE FOR RESIDUE ACT B 423
049FC4SOFTWAREILE B:181 , PHE B:201 , PRO G:210BINDING SITE FOR RESIDUE ACT B 424
050FC5SOFTWAREARG B:276 , ASP B:277 , HIS B:323 , HOH B:512 , HOH B:544BINDING SITE FOR RESIDUE ACT B 425
051FC6SOFTWAREGLU B:162 , SER B:239 , DC C:2 , DG C:4 , HOH C:204 , DT J:8BINDING SITE FOR RESIDUE 6AH C 101
052FC7SOFTWAREGLU A:162 , SER A:239 , DC D:2 , DG D:4 , DA D:5 , HOH D:201 , DT H:8BINDING SITE FOR RESIDUE 6AH D 101
053FC8SOFTWAREDA D:6 , DT D:7 , EDO D:103 , THR G:240 , GLU G:242 , HIS G:243BINDING SITE FOR RESIDUE EDO D 102
054FC9SOFTWAREDT D:7 , EDO D:102 , HOH D:210 , DA H:5 , HOH H:203BINDING SITE FOR RESIDUE EDO D 103
055GC1SOFTWARETHR A:240 , GLU A:242 , DA D:5BINDING SITE FOR RESIDUE EDO D 104
056GC2SOFTWAREASN E:289 , PHE E:291 , PHE E:330 , ARG E:331 , ALA E:332 , GLU E:333 , HOH E:504 , HOH E:577 , EDO I:405BINDING SITE FOR RESIDUE EDO E 401
057GC3SOFTWARETRP E:307 , ASP E:308 , ASN E:312 , ASN E:314 , LEU E:315 , ASP E:358BINDING SITE FOR RESIDUE EDO E 402
058GC4SOFTWARETYR E:153 , ASP E:343 , HOH E:664 , CYS K:149 , LEU K:152 , GLU K:348 , EDO K:412BINDING SITE FOR RESIDUE EDO E 403
059GC5SOFTWAREPHE E:209 , PRO E:210 , ASN E:211 , GLU E:246 , ARG E:249BINDING SITE FOR RESIDUE EDO E 404
060GC6SOFTWAREASP E:263 , THR E:265 , ARG E:331 , ALA E:332 , GLU E:333BINDING SITE FOR RESIDUE EDO E 405
061GC7SOFTWAREGLN E:304 , TYR E:305 , ASP E:308 , LEU E:344 , TRP E:360BINDING SITE FOR RESIDUE EDO E 406
062GC8SOFTWARESER E:148 , ALA E:151 , SER K:341 , HOH K:528 , HOH K:579BINDING SITE FOR RESIDUE EDO E 407
063GC9SOFTWAREACT E:422 , EDO K:403BINDING SITE FOR RESIDUE EDO E 408
064HC1SOFTWAREVAL A:369 , GLY E:133 , LEU E:134 , GLY E:136 , HOH E:549 , HOH E:645BINDING SITE FOR RESIDUE EDO E 409
065HC2SOFTWAREGLY E:335 , ILE E:338 , HOH E:545 , HOH E:551BINDING SITE FOR RESIDUE EDO E 410
066HC3SOFTWARELYS E:299 , GLN E:304 , EDO E:418 , HOH E:646BINDING SITE FOR RESIDUE EDO E 411
067HC4SOFTWAREHIS E:302 , SER E:341 , LEU E:342BINDING SITE FOR RESIDUE EDO E 412
068HC5SOFTWAREGLU E:295 , PHE E:296BINDING SITE FOR RESIDUE EDO E 413
069HC6SOFTWARECYS E:149 , TYR E:153 , VAL E:345 , GLY E:346 , LEU E:347 , EDO K:409 , EDO K:412BINDING SITE FOR RESIDUE EDO E 414
070HC7SOFTWAREASP E:277 , TRP E:294 , GLN E:304 , ARG E:324 , EDO E:418 , HOH E:624BINDING SITE FOR RESIDUE EDO E 415
071HC8SOFTWARECYS E:283 , GLY E:285 , PRO E:287 , HOH E:522 , ARG I:144BINDING SITE FOR RESIDUE EDO E 416
072HC9SOFTWARELYS A:173 , SER E:264 , GLU E:333 , HIS E:336 , HOH E:520 , HOH E:524 , HOH E:571 , HOH E:627BINDING SITE FOR RESIDUE EDO E 417
073IC1SOFTWAREASP E:277 , LYS E:299 , EDO E:411 , EDO E:415 , HOH E:624BINDING SITE FOR RESIDUE EDO E 418
074IC2SOFTWAREILE E:181 , PHE E:201 , HOH E:666BINDING SITE FOR RESIDUE EDO E 419
075IC3SOFTWAREASN E:313 , ARG E:316 , CYS E:352 , GLY E:353 , ARG E:354 , HOH E:532BINDING SITE FOR RESIDUE EDO E 420
076IC4SOFTWARETHR E:179 , LEU E:194 , LYS E:196 , VAL E:199 , PHE E:201 , HOH E:607 , HOH E:649BINDING SITE FOR RESIDUE ACT E 421
077IC5SOFTWARESER E:125 , TYR E:153 , EDO E:408 , LEU K:152BINDING SITE FOR RESIDUE ACT E 422
078IC6SOFTWARELYS E:172 , ILE E:180 , HOH E:546BINDING SITE FOR RESIDUE ACT E 423
079IC7SOFTWAREARG E:276 , ASP E:277 , LYS E:322 , HIS E:323 , HOH E:543BINDING SITE FOR RESIDUE ACT E 424
080IC8SOFTWAREGLU E:162 , SER E:239 , DC F:2 , DG F:4 , DT L:8BINDING SITE FOR RESIDUE 6AH F 101
081IC9SOFTWAREDA F:5 , HOH F:205 , HOH F:212 , HOH F:222BINDING SITE FOR RESIDUE EDO F 102
082JC1SOFTWARETRP K:307 , ASP K:308 , THR K:309 , ASN K:312 , ASN K:314 , LEU K:315 , ASP K:358BINDING SITE FOR RESIDUE EDO K 401
083JC2SOFTWAREARG E:144 , GLY E:145 , SER E:148 , GLU E:348 , HIS K:302 , ASP K:343 , HOH K:514 , HOH K:579BINDING SITE FOR RESIDUE EDO K 402
084JC3SOFTWARESER E:341 , EDO E:408 , HOH E:617 , SER K:148 , ALA K:151BINDING SITE FOR RESIDUE EDO K 403
085JC4SOFTWAREHIS E:302 , ARG K:144 , GLY K:145 , SER K:148 , HOH K:519BINDING SITE FOR RESIDUE EDO K 404
086JC5SOFTWARELEU E:347 , GLU E:348 , LYS E:349 , ALA K:311 , EDO K:408 , HOH K:516BINDING SITE FOR RESIDUE EDO K 405
087JC6SOFTWARETYR K:153 , SER K:154BINDING SITE FOR RESIDUE EDO K 406
088JC7SOFTWARELEU K:139 , TYR K:170BINDING SITE FOR RESIDUE EDO K 407
089JC8SOFTWARETYR K:305 , ASP K:308 , ALA K:311 , LEU K:344 , TRP K:360 , EDO K:405BINDING SITE FOR RESIDUE EDO K 408
090JC9SOFTWARECYS E:149 , GLU E:348 , EDO E:414 , TYR K:153 , ASP K:343 , LEU K:344BINDING SITE FOR RESIDUE EDO K 409
091KC1SOFTWARETHR K:309 , ILE K:317 , PRO K:318 , ALA K:319 , ALA K:320BINDING SITE FOR RESIDUE EDO K 410
092KC2SOFTWAREGLN K:304 , TYR K:305 , HOH K:626BINDING SITE FOR RESIDUE EDO K 411
093KC3SOFTWAREEDO E:403 , EDO E:414 , CYS K:149 , TYR K:153 , LEU K:344 , VAL K:345 , GLY K:346 , LEU K:347BINDING SITE FOR RESIDUE EDO K 412
094KC4SOFTWAREGLY G:136 , PRO G:140 , TYR G:170 , GLY K:136 , CYS K:137BINDING SITE FOR RESIDUE EDO K 413
095KC5SOFTWAREARG K:241 , ARG K:276 , GLN K:278 , ACT K:415 , HOH K:502 , HOH K:580BINDING SITE FOR RESIDUE EDO K 414
096KC6SOFTWAREASP K:277 , GLN K:278 , HIS K:323 , EDO K:414BINDING SITE FOR RESIDUE ACT K 415
097KC7SOFTWARELYS K:310 , ALA K:311 , LYS K:349BINDING SITE FOR RESIDUE ACT K 416
098KC8SOFTWAREPHE K:209 , PRO K:210 , ASN K:211 , GLU K:246 , ARG K:249 , THR K:253BINDING SITE FOR RESIDUE ACT K 417
099KC9SOFTWAREHOH F:220 , GLU K:162 , ARG K:216 , SER K:239 , DC L:2BINDING SITE FOR RESIDUE 6AH L 101
100LC1SOFTWAREPHE G:209 , PRO G:210 , ASN G:211 , GLU G:246 , ARG G:249BINDING SITE FOR RESIDUE EDO G 401
101LC2SOFTWAREPHE G:296 , EDO G:404BINDING SITE FOR RESIDUE EDO G 402
102LC3SOFTWARESER A:148 , ALA A:151 , SER G:341 , EDO G:406 , HOH G:524 , HOH G:594BINDING SITE FOR RESIDUE EDO G 403
103LC4SOFTWAREGLY G:298 , EDO G:402 , HOH G:601BINDING SITE FOR RESIDUE EDO G 404
104LC5SOFTWAREEDO A:418 , TYR G:305 , ASP G:308 , ALA G:311 , TRP G:360BINDING SITE FOR RESIDUE EDO G 405
105LC6SOFTWAREALA A:151 , EDO G:403 , EDO G:407 , HOH G:524BINDING SITE FOR RESIDUE EDO G 406
106LC7SOFTWARELEU A:152 , EDO A:414 , SER G:125 , TYR G:153 , SER G:154 , PRO G:155 , EDO G:406BINDING SITE FOR RESIDUE EDO G 407
107LC8SOFTWAREGLU G:205 , LYS G:257BINDING SITE FOR RESIDUE EDO G 408
108LC9SOFTWARETRP G:307 , ASP G:308 , ASN G:312 , ASN G:314 , LEU G:315 , ASP G:358BINDING SITE FOR RESIDUE EDO G 409
109MC1SOFTWAREASP A:351 , LEU G:297 , GLY G:298 , PRO G:300BINDING SITE FOR RESIDUE EDO G 410
110MC2SOFTWAREASP G:135 , ASN G:314 , ARG G:316 , ARG G:354BINDING SITE FOR RESIDUE EDO G 411
111MC3SOFTWAREARG G:276 , ASP G:277 , HIS G:323 , HOH G:526BINDING SITE FOR RESIDUE ACT G 412
112MC4SOFTWAREARG G:241 , GLU G:279BINDING SITE FOR RESIDUE ACT G 413
113MC5SOFTWARELYS G:310 , ALA G:311 , LYS G:349BINDING SITE FOR RESIDUE ACT G 414
114MC6SOFTWAREGLU G:162 , SER G:239 , DC H:2BINDING SITE FOR RESIDUE 6AH H 101
115MC7SOFTWAREEDO A:403 , DT H:7 , DT H:8BINDING SITE FOR RESIDUE EDO H 102
116MC8SOFTWAREMET A:214 , DT H:7 , HOH H:201 , HOH H:202 , HOH H:206BINDING SITE FOR RESIDUE EDO H 103
117MC9SOFTWAREDC D:9 , DC H:2 , DG H:4BINDING SITE FOR RESIDUE EDO H 104
118NC1SOFTWAREALA I:311 , ASN I:313 , LYS I:349 , EDO I:403BINDING SITE FOR RESIDUE EDO I 401
119NC2SOFTWARETHR I:179 , LEU I:194 , LYS I:196 , VAL I:199 , PHE I:201BINDING SITE FOR RESIDUE EDO I 402
120NC3SOFTWAREALA I:311 , LEU I:347 , PHE I:355 , EDO I:401 , EDO I:409 , EDO I:410BINDING SITE FOR RESIDUE EDO I 403
121NC4SOFTWAREGLN I:304 , TYR I:305 , ASP I:308 , ALA I:311 , TRP I:360 , EDO I:410BINDING SITE FOR RESIDUE EDO I 404
122NC5SOFTWAREPHE E:291 , GLU E:334 , EDO E:401 , ALA I:169 , ACT I:420 , HOH I:503BINDING SITE FOR RESIDUE EDO I 405
123NC6SOFTWARESER B:148 , SER I:341 , HOH I:550BINDING SITE FOR RESIDUE EDO I 406
124NC7SOFTWAREGLU A:185 , GLU A:186 , CYS I:168 , ILE I:180BINDING SITE FOR RESIDUE EDO I 407
125NC8SOFTWARETYR B:153 , ASP B:343 , SER I:148 , CYS I:149 , LEU I:152 , GLU I:348 , ACT I:418 , ACT I:419 , HOH I:542BINDING SITE FOR RESIDUE EDO I 408
126NC9SOFTWARELEU B:347 , HOH B:542 , LYS I:349 , EDO I:403 , HOH I:512BINDING SITE FOR RESIDUE EDO I 409
127OC1SOFTWAREGLU B:348 , LYS B:349 , ALA I:311 , EDO I:403 , EDO I:404 , HOH I:517BINDING SITE FOR RESIDUE EDO I 410
128OC2SOFTWAREASP I:277 , VAL I:280 , GLU I:295 , ARG I:324 , ARG I:327 , HOH I:568 , HOH I:611BINDING SITE FOR RESIDUE EDO I 411
129OC3SOFTWARECYS E:283 , GLU I:141 , ARG I:144 , ASP I:351BINDING SITE FOR RESIDUE EDO I 412
130OC4SOFTWARECYS A:168 , LYS A:172 , THR A:182 , ASN A:184 , GLU A:185 , PHE A:189 , GLU I:185BINDING SITE FOR RESIDUE EDO I 413
131OC5SOFTWARECYS B:149 , LEU B:152 , GLU B:348 , EDO B:403 , HOH B:567 , TYR I:153 , ASP I:343BINDING SITE FOR RESIDUE EDO I 414
132OC6SOFTWARELYS I:172 , HOH I:624BINDING SITE FOR RESIDUE EDO I 415
133OC7SOFTWAREASP I:277 , GLN I:304 , ARG I:324BINDING SITE FOR RESIDUE EDO I 416
134OC8SOFTWAREPHE I:209 , PRO I:210 , ASN I:211 , GLU I:246 , ARG I:249 , THR I:253BINDING SITE FOR RESIDUE ACT I 417
135OC9SOFTWAREHIS B:302 , ASP B:343 , GLY I:145 , EDO I:408 , HOH I:542BINDING SITE FOR RESIDUE ACT I 418
136PC1SOFTWAREEDO B:403 , CYS I:149 , TYR I:153 , GLY I:346 , LEU I:347 , GLU I:348 , EDO I:408BINDING SITE FOR RESIDUE ACT I 419
137PC2SOFTWAREPRO I:165 , LYS I:172 , EDO I:405BINDING SITE FOR RESIDUE ACT I 420
138PC3SOFTWAREGLU I:162 , SER I:239 , DC J:2 , DG J:4 , HOH J:206BINDING SITE FOR RESIDUE 6AH J 101
139PC4SOFTWARELEU I:134 , DC J:2BINDING SITE FOR RESIDUE EDO J 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GZ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GZ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4GZ0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhh.......eehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gz0 A 121 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370


Chain B from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhh......eehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gz0 B 121 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370


Chain C from PDB  Type:DNA  Length:9
                                         
                 4gz0 C   2 CCGAATTCG  10


Chain D from PDB  Type:DNA  Length:9
                                         
                 4gz0 D   2 CCGAATTCG  10


Chain E from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhh......eehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gz0 E 121 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370


Chain F from PDB  Type:DNA  Length:9
                                         
                 4gz0 F   2 CCGAATTCG  10


Chain G from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh......eeehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gz0 G 122 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         


Chain H from PDB  Type:DNA  Length:9
                                         
                 4gz0 H   2 CCGAATTCG  10


Chain I from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhh......eehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gz0 I 121 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370


Chain J from PDB  Type:DNA  Length:9
                                         
                 4gz0 J   2 CCGAATTCG  10


Chain K from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh.......eehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gz0 K 122 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         


Chain L from PDB  Type:DNA  Length:9
                                         
                 4gz0 L   2 CCGAATTCG  10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GZ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GZ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GZ0)

(-) Gene Ontology  (19, 19)

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  TYDP2_MOUSE | Q9JJX7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYDP2_MOUSE | Q9JJX7: 4gyz 4gz1 4gz2 4puq 5ht2 5ink 5inl 5inm 5inn 5inp 5inq 5j3z 5j42

(-) Related Entries Specified in the PDB File

4gyz 4gz1 4gz2