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(-) Description

Title :  MUS MUSCULUS TDP2 BOUND TO DAMP AND MG2+
 
Authors :  M. J. Schellenberg, R. S. Williams
Date :  05 Sep 12  (Deposition) - 31 Oct 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Keywords :  Protein-Dna Complex, Dna Repair, 5'-Dna End Processing, Endonuclease/Exonuclease/Phosphatase Domain, Eep Domain, 5'-Dna End Recognition, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Schellenberg, C. D. Appel, S. Adhikari, P. D. Robertson, D. A. Ramsden, R. S. Williams
Mechanism Of Repair Of 5'-Topoisomerase Ii-Dna Adducts By Mammalian Tyrosyl-Dna Phosphodiesterase 2.
Nat. Struct. Mol. Biol. V. 19 1363 2012
PubMed-ID: 23104055  |  Reference-DOI: 10.1038/NSMB.2418

(-) Compounds

Molecule 1 - TYROSYL-DNA PHOSPHODIESTERASE 2
    Chains: A, B, C, D, E, F, G, H, I
    EC Number: 3.1.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG9
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 460008
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 118-370)
    Gene: TDP2, TTRAP
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: TYR-DNA PHOSPHODIESTERASE 2, 5'-TYROSYL-DNA PHOSPHODIESTERASE, 5'-TYR-DNA PHOSPHODIESTERASE, TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (1x): A        
Biological Unit 2 (1x):  B       
Biological Unit 3 (1x):   C      
Biological Unit 4 (1x):    D     
Biological Unit 5 (1x):     E    
Biological Unit 6 (1x):      F   
Biological Unit 7 (1x):       G  
Biological Unit 8 (1x):        H 
Biological Unit 9 (1x):         I

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric Unit (4, 19)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2D5M6Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG9Ligand/IonMAGNESIUM ION
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M-1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M-1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 9 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2D5M-1Ligand/Ion2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:130 , GLU A:162 , HIS A:236 , SER A:239 , ASP A:272 , ASN A:274 , TRP A:307 , PHE A:325 , HIS A:359 , MG A:402 , HOH A:516 , HOH A:521 , HOH A:531 , SER B:148 , CYS B:149 , LEU B:152 , GLU B:348BINDING SITE FOR RESIDUE D5M A 401
02AC2SOFTWAREGLU A:162 , D5M A:401 , HOH A:516 , HOH A:521 , HOH A:531 , HOH A:554BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREASN B:130 , GLU B:162 , HIS B:236 , SER B:239 , ASP B:272 , ASN B:274 , ARG B:276 , TRP B:307 , PHE B:325 , HIS B:359 , MG B:402 , HOH B:511 , HOH B:512 , HOH B:516 , SER D:148BINDING SITE FOR RESIDUE D5M B 401
04AC4SOFTWAREGLU B:162 , D5M B:401 , HOH B:510 , HOH B:511 , HOH B:512 , HOH B:516BINDING SITE FOR RESIDUE MG B 402
05AC5SOFTWARETYR C:153 , GLY C:346 , LEU C:347 , HOH C:518BINDING SITE FOR RESIDUE CL C 401
06AC6SOFTWAREASN C:130 , GLU C:162 , HIS C:236 , SER C:239 , ASP C:272 , ASN C:274 , ARG C:276 , TRP C:307 , HIS C:359 , MG C:403 , HOH C:536 , HOH C:546 , HOH C:547 , SER H:148BINDING SITE FOR RESIDUE D5M C 402
07AC7SOFTWAREGLU C:162 , D5M C:402 , HOH C:536 , HOH C:546 , HOH C:547 , HOH C:548BINDING SITE FOR RESIDUE MG C 403
08AC8SOFTWARETYR D:153 , GLY D:346 , LEU D:347BINDING SITE FOR RESIDUE CL D 401
09AC9SOFTWAREASN D:130 , GLU D:162 , HIS D:236 , SER D:239 , ASP D:272 , ASN D:274 , PHE D:325 , HIS D:359 , MG D:403 , HOH D:528 , HOH D:529 , HOH D:531 , SER I:148 , CYS I:149 , LEU I:152 , GLU I:348BINDING SITE FOR RESIDUE D5M D 402
10BC1SOFTWAREGLU D:162 , D5M D:402 , HOH D:528 , HOH D:529 , HOH D:531 , HOH D:538BINDING SITE FOR RESIDUE MG D 403
11BC2SOFTWARESER A:148 , CYS A:149 , LEU A:152 , ASN E:130 , GLU E:162 , HIS E:236 , SER E:239 , THR E:240 , ASP E:272 , ASN E:274 , ARG E:276 , PHE E:325 , HIS E:359 , MG E:402 , HOH E:532 , HOH E:534 , HOH E:540BINDING SITE FOR RESIDUE D5M E 401
12BC3SOFTWAREGLU E:162 , D5M E:401 , HOH E:521 , HOH E:532 , HOH E:533 , HOH E:534BINDING SITE FOR RESIDUE MG E 402
13BC4SOFTWAREASN F:130 , GLU F:162 , HIS F:236 , SER F:239 , ASP F:272 , ASN F:274 , HIS F:359 , MG F:402 , HOH F:510 , HOH F:511BINDING SITE FOR RESIDUE PO4 F 401
14BC5SOFTWAREGLU F:162 , PO4 F:401 , HOH F:510 , HOH F:511 , HOH F:518 , HOH F:523BINDING SITE FOR RESIDUE MG F 402
15BC6SOFTWAREASP G:132 , GLU G:162 , HOH G:536 , HOH G:537 , HOH G:538 , HOH G:539BINDING SITE FOR RESIDUE MG G 401
16BC7SOFTWARESER E:148 , LEU E:152 , ASN H:130 , GLU H:162 , HIS H:236 , SER H:239 , THR H:240 , ASP H:272 , ASN H:274 , ARG H:276 , TRP H:307 , PHE H:325 , HIS H:359 , MG H:402 , HOH H:516 , HOH H:520 , HOH H:521 , HOH H:530BINDING SITE FOR RESIDUE D5M H 401
17BC8SOFTWAREGLU H:162 , D5M H:401 , HOH H:516 , HOH H:519 , HOH H:520 , HOH H:521BINDING SITE FOR RESIDUE MG H 402
18BC9SOFTWAREHIS I:302 , LEU I:342BINDING SITE FOR RESIDUE CL I 401
19CC1SOFTWAREASP I:132 , GLU I:162 , HOH I:529 , HOH I:530 , HOH I:537BINDING SITE FOR RESIDUE MG I 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GYZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GYZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GYZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GYZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4GYZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhh.....eeehhhhh..hhhhh..ee.............ee..eeeeee...eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gyz A 123 TISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332|      344       354       364      
                                                                                                                                                                                                                                           332|                                   
                                                                                                                                                                                                                                            335                                   


Chain B from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhh......eeehhhhh.........ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz B 121 SSTISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVV 369
                                   130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360         


Chain C from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhh......eeehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeeeee...............eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz C 122 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVV 369
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361        


Chain D from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhh.....eeehhhhh...................eeeeee.....eeeeeeeee...............eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz D 122 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVV 369
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271    || 282       292       302       312|      331       341       351       361        
                                                                                                                                                                                    276|                               312|                                               
                                                                                                                                                                                     278                                322                                               


Chain E from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhh......eeeeeee.....hhhhhh.......eehhhhh.........ee.............ee..eeeeeehhhh.eeeeeeeee...............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz E 122 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVVL 370
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         


Chain F from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeee.......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee.......hhhhhhhhhhhhhhhh......eeeeeeee.....hhhhhh......eeehhhhh..hhhhh..ee.............ee..eeeeee.....eeeeeee...............eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz F 122 STISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLN 367
                                   131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331||     343       353       363    
                                                                                                                                                                                                                                            332|                                
                                                                                                                                                                                                                                             335                                


Chain G from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee...eeeeeeeeee........eeeeeeeee..eeeeeeee.......hhhhhhhhhhhhhhhhh......eeeeeee.....hhhhhh.......eehhhhh..hhhhh..ee.............ee..eeeeee...eeeeeeee...............eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz G 123 TISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 368
                                   132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       335       345       355       365   
                                                                                                                                                                                                                                          331|                                 
                                                                                                                                                                                                                                           335                                 


Chain H from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee....eeeeeeeee........eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhhh.....eeehhhhh..hhhhh..ee.............ee..eeeeee..eeeeeeeee...............eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyz H 123 TISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNVV 369
                                   132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332|      345       355       365    
                                                                                                                                                                                                                                           332|                                 
                                                                                                                                                                                                                                            336                                 


Chain I from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.......hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhh..eeeee......eeeeeee....eeeeeeeee........eeeeeeeee..eeeeeee........hhhhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhhh.....eeehhhhh..hhhhh..ee.............ee..eeeeee......eeeeeeee...............eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gyz I 123 TISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 368
                                   132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GYZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GYZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GYZ)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

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  TYDP2_MOUSE | Q9JJX7
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  TYDP2_MOUSE | Q9JJX7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYDP2_MOUSE | Q9JJX7: 4gz0 4gz1 4gz2 4puq 5ht2 5ink 5inl 5inm 5inn 5inp 5inq 5j3z 5j42

(-) Related Entries Specified in the PDB File

4gz0 4gz1 4gz2