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4GZ0
Biol. Unit 2
Info
Asym.Unit (597 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (102 KB)
Biol.Unit 5 (103 KB)
Biol.Unit 6 (103 KB)
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Title
:
MUS MUSCULUS TDP2-DNA SUBSTRATE ANALOG (5'-6-AMINOHEXANOL) COMPLEX
Authors
:
M. J. Schellenberg, R. S. Williams
Date
:
05 Sep 12 (Deposition) - 31 Oct 12 (Release) - 02 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Protein-Dna Complex, Dna Repair, 5'-Dna End Processing, Endonuclease/Exonuclease/Phosphatase Domain, Eep Domain, 5'-Dna End Recognition, Eep, Endonuclease/Exonuclease/Phosphatase Domain, 5'-End Recognition, Nuclear, Hydrolase, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, C. D. Appel, S. Adhikari, P. D. Robertson, D. A. Ramsden, R. S. Williams
Mechanism Of Repair Of 5'-Topoisomerase Ii-Dna Adducts By Mammalian Tyrosyl-Dna Phosphodiesterase 2.
Nat. Struct. Mol. Biol. V. 19 1363 2012
[
close entry info
]
Hetero Components
(3, 26)
Info
All Hetero Components
1a: 6-AMINOHEXAN-1-OL (6AHa)
1b: 6-AMINOHEXAN-1-OL (6AHb)
1c: 6-AMINOHEXAN-1-OL (6AHc)
1d: 6-AMINOHEXAN-1-OL (6AHd)
1e: 6-AMINOHEXAN-1-OL (6AHe)
1f: 6-AMINOHEXAN-1-OL (6AHf)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
2k: ACETATE ION (ACTk)
2l: ACETATE ION (ACTl)
2m: ACETATE ION (ACTm)
2n: ACETATE ION (ACTn)
2o: ACETATE ION (ACTo)
2p: ACETATE ION (ACTp)
2q: ACETATE ION (ACTq)
2r: ACETATE ION (ACTr)
2s: ACETATE ION (ACTs)
2t: ACETATE ION (ACTt)
2u: ACETATE ION (ACTu)
2v: ACETATE ION (ACTv)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3aj: 1,2-ETHANEDIOL (EDOaj)
3ak: 1,2-ETHANEDIOL (EDOak)
3al: 1,2-ETHANEDIOL (EDOal)
3am: 1,2-ETHANEDIOL (EDOam)
3an: 1,2-ETHANEDIOL (EDOan)
3ao: 1,2-ETHANEDIOL (EDOao)
3ap: 1,2-ETHANEDIOL (EDOap)
3aq: 1,2-ETHANEDIOL (EDOaq)
3ar: 1,2-ETHANEDIOL (EDOar)
3as: 1,2-ETHANEDIOL (EDOas)
3at: 1,2-ETHANEDIOL (EDOat)
3au: 1,2-ETHANEDIOL (EDOau)
3av: 1,2-ETHANEDIOL (EDOav)
3aw: 1,2-ETHANEDIOL (EDOaw)
3ax: 1,2-ETHANEDIOL (EDOax)
3ay: 1,2-ETHANEDIOL (EDOay)
3az: 1,2-ETHANEDIOL (EDOaz)
3b: 1,2-ETHANEDIOL (EDOb)
3ba: 1,2-ETHANEDIOL (EDOba)
3bb: 1,2-ETHANEDIOL (EDObb)
3bc: 1,2-ETHANEDIOL (EDObc)
3bd: 1,2-ETHANEDIOL (EDObd)
3be: 1,2-ETHANEDIOL (EDObe)
3bf: 1,2-ETHANEDIOL (EDObf)
3bg: 1,2-ETHANEDIOL (EDObg)
3bh: 1,2-ETHANEDIOL (EDObh)
3bi: 1,2-ETHANEDIOL (EDObi)
3bj: 1,2-ETHANEDIOL (EDObj)
3bk: 1,2-ETHANEDIOL (EDObk)
3bl: 1,2-ETHANEDIOL (EDObl)
3bm: 1,2-ETHANEDIOL (EDObm)
3bn: 1,2-ETHANEDIOL (EDObn)
3bo: 1,2-ETHANEDIOL (EDObo)
3bp: 1,2-ETHANEDIOL (EDObp)
3bq: 1,2-ETHANEDIOL (EDObq)
3br: 1,2-ETHANEDIOL (EDObr)
3bs: 1,2-ETHANEDIOL (EDObs)
3bt: 1,2-ETHANEDIOL (EDObt)
3bu: 1,2-ETHANEDIOL (EDObu)
3bv: 1,2-ETHANEDIOL (EDObv)
3bw: 1,2-ETHANEDIOL (EDObw)
3bx: 1,2-ETHANEDIOL (EDObx)
3by: 1,2-ETHANEDIOL (EDOby)
3bz: 1,2-ETHANEDIOL (EDObz)
3c: 1,2-ETHANEDIOL (EDOc)
3ca: 1,2-ETHANEDIOL (EDOca)
3cb: 1,2-ETHANEDIOL (EDOcb)
3cc: 1,2-ETHANEDIOL (EDOcc)
3cd: 1,2-ETHANEDIOL (EDOcd)
3ce: 1,2-ETHANEDIOL (EDOce)
3cf: 1,2-ETHANEDIOL (EDOcf)
3cg: 1,2-ETHANEDIOL (EDOcg)
3ch: 1,2-ETHANEDIOL (EDOch)
3ci: 1,2-ETHANEDIOL (EDOci)
3cj: 1,2-ETHANEDIOL (EDOcj)
3ck: 1,2-ETHANEDIOL (EDOck)
3cl: 1,2-ETHANEDIOL (EDOcl)
3cm: 1,2-ETHANEDIOL (EDOcm)
3cn: 1,2-ETHANEDIOL (EDOcn)
3co: 1,2-ETHANEDIOL (EDOco)
3cp: 1,2-ETHANEDIOL (EDOcp)
3cq: 1,2-ETHANEDIOL (EDOcq)
3cr: 1,2-ETHANEDIOL (EDOcr)
3cs: 1,2-ETHANEDIOL (EDOcs)
3ct: 1,2-ETHANEDIOL (EDOct)
3cu: 1,2-ETHANEDIOL (EDOcu)
3cv: 1,2-ETHANEDIOL (EDOcv)
3cw: 1,2-ETHANEDIOL (EDOcw)
3cx: 1,2-ETHANEDIOL (EDOcx)
3cy: 1,2-ETHANEDIOL (EDOcy)
3cz: 1,2-ETHANEDIOL (EDOcz)
3d: 1,2-ETHANEDIOL (EDOd)
3da: 1,2-ETHANEDIOL (EDOda)
3db: 1,2-ETHANEDIOL (EDOdb)
3dc: 1,2-ETHANEDIOL (EDOdc)
3dd: 1,2-ETHANEDIOL (EDOdd)
3de: 1,2-ETHANEDIOL (EDOde)
3df: 1,2-ETHANEDIOL (EDOdf)
3dg: 1,2-ETHANEDIOL (EDOdg)
3dh: 1,2-ETHANEDIOL (EDOdh)
3di: 1,2-ETHANEDIOL (EDOdi)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6AH
1
Ligand/Ion
6-AMINOHEXAN-1-OL
2
ACT
3
Ligand/Ion
ACETATE ION
3
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: CC9 (SOFTWARE)
02: DC1 (SOFTWARE)
03: DC2 (SOFTWARE)
04: DC3 (SOFTWARE)
05: DC4 (SOFTWARE)
06: DC5 (SOFTWARE)
07: DC6 (SOFTWARE)
08: DC7 (SOFTWARE)
09: DC8 (SOFTWARE)
10: DC9 (SOFTWARE)
11: EC1 (SOFTWARE)
12: EC2 (SOFTWARE)
13: EC3 (SOFTWARE)
14: EC4 (SOFTWARE)
15: EC5 (SOFTWARE)
16: EC6 (SOFTWARE)
17: EC7 (SOFTWARE)
18: EC8 (SOFTWARE)
19: EC9 (SOFTWARE)
20: FC1 (SOFTWARE)
21: FC2 (SOFTWARE)
22: FC3 (SOFTWARE)
23: FC4 (SOFTWARE)
24: FC5 (SOFTWARE)
25: FC6 (SOFTWARE)
26: NC6 (SOFTWARE)
27: NC8 (SOFTWARE)
28: NC9 (SOFTWARE)
29: OC1 (SOFTWARE)
30: OC5 (SOFTWARE)
31: OC9 (SOFTWARE)
32: PC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC9
SOFTWARE
TRP B:307 , ASP B:308 , ASN B:312 , ASN B:314 , LEU B:315 , ASP B:358
BINDING SITE FOR RESIDUE EDO B 401
02
DC1
SOFTWARE
PHE B:209 , PRO B:210 , ASN B:211 , THR B:212 , GLU B:246 , ARG B:249
BINDING SITE FOR RESIDUE EDO B 402
03
DC2
SOFTWARE
CYS B:149 , TYR B:153 , LEU B:344 , VAL B:345 , GLY B:346 , LEU B:347 , EDO I:414 , ACT I:419
BINDING SITE FOR RESIDUE EDO B 403
04
DC3
SOFTWARE
SER B:341 , EDO B:406 , SER I:148
BINDING SITE FOR RESIDUE EDO B 404
05
DC4
SOFTWARE
SER B:125 , TYR B:153 , EDO B:406 , HOH B:573 , LEU I:152
BINDING SITE FOR RESIDUE EDO B 405
06
DC5
SOFTWARE
THR B:123 , EDO B:404 , EDO B:405 , HOH B:619 , ALA I:151
BINDING SITE FOR RESIDUE EDO B 406
07
DC6
SOFTWARE
ARG B:144 , GLU B:348 , HIS I:302 , ASP I:343
BINDING SITE FOR RESIDUE EDO B 408
08
DC7
SOFTWARE
GLU B:205 , ILE B:206 , THR G:253
BINDING SITE FOR RESIDUE EDO B 409
09
DC8
SOFTWARE
ARG B:241 , GLU B:279 , HOH B:597 , HOH B:639
BINDING SITE FOR RESIDUE EDO B 410
10
DC9
SOFTWARE
ARG B:198 , LYS B:200 , SER B:224 , LEU B:225 , GLY B:226 , GLY B:227 , HOH B:602
BINDING SITE FOR RESIDUE EDO B 411
11
EC1
SOFTWARE
LEU B:286 , PRO B:287 , VAL B:290 , PHE B:291 , HOH B:528
BINDING SITE FOR RESIDUE EDO B 412
12
EC2
SOFTWARE
TYR B:188
BINDING SITE FOR RESIDUE EDO B 413
13
EC3
SOFTWARE
HIS B:302 , SER B:341 , LEU B:342 , HOH I:578
BINDING SITE FOR RESIDUE EDO B 414
14
EC4
SOFTWARE
TYR B:178 , THR B:179 , ILE B:180 , LYS B:196
BINDING SITE FOR RESIDUE EDO B 415
15
EC5
SOFTWARE
PRO B:165 , PRO B:166 , ALA B:169
BINDING SITE FOR RESIDUE EDO B 416
16
EC6
SOFTWARE
ASN B:184 , MET B:215 , ASN B:217 , HOH B:576 , GLU G:260
BINDING SITE FOR RESIDUE EDO B 417
17
EC7
SOFTWARE
ARG B:144 , SER B:148 , ARG B:174
BINDING SITE FOR RESIDUE EDO B 418
18
EC8
SOFTWARE
CYS B:147 , ALA B:151 , ARG B:174 , ALA B:175 , SER B:177 , TYR B:178 , HOH B:521 , HOH B:559
BINDING SITE FOR RESIDUE EDO B 419
19
EC9
SOFTWARE
LEU B:297 , GLY B:298 , HOH B:584 , HOH B:586 , GLN E:278 , LYS E:282
BINDING SITE FOR RESIDUE EDO B 420
20
FC1
SOFTWARE
TYR B:305 , LYS B:322
BINDING SITE FOR RESIDUE EDO B 421
21
FC2
SOFTWARE
CYS B:168 , GLU B:185 , PHE B:189
BINDING SITE FOR RESIDUE EDO B 422
22
FC3
SOFTWARE
THR B:179 , LEU B:194 , LYS B:196 , VAL B:199 , PHE B:201 , HOH B:558
BINDING SITE FOR RESIDUE ACT B 423
23
FC4
SOFTWARE
ILE B:181 , PHE B:201 , PRO G:210
BINDING SITE FOR RESIDUE ACT B 424
24
FC5
SOFTWARE
ARG B:276 , ASP B:277 , HIS B:323 , HOH B:512 , HOH B:544
BINDING SITE FOR RESIDUE ACT B 425
25
FC6
SOFTWARE
GLU B:162 , SER B:239 , DC C:2 , DG C:4 , HOH C:204 , DT J:8
BINDING SITE FOR RESIDUE 6AH C 101
26
NC6
SOFTWARE
SER B:148 , SER I:341 , HOH I:550
BINDING SITE FOR RESIDUE EDO I 406
27
NC8
SOFTWARE
TYR B:153 , ASP B:343 , SER I:148 , CYS I:149 , LEU I:152 , GLU I:348 , ACT I:418 , ACT I:419 , HOH I:542
BINDING SITE FOR RESIDUE EDO I 408
28
NC9
SOFTWARE
LEU B:347 , HOH B:542 , LYS I:349 , EDO I:403 , HOH I:512
BINDING SITE FOR RESIDUE EDO I 409
29
OC1
SOFTWARE
GLU B:348 , LYS B:349 , ALA I:311 , EDO I:403 , EDO I:404 , HOH I:517
BINDING SITE FOR RESIDUE EDO I 410
30
OC5
SOFTWARE
CYS B:149 , LEU B:152 , GLU B:348 , EDO B:403 , HOH B:567 , TYR I:153 , ASP I:343
BINDING SITE FOR RESIDUE EDO I 414
31
OC9
SOFTWARE
HIS B:302 , ASP B:343 , GLY I:145 , EDO I:408 , HOH I:542
BINDING SITE FOR RESIDUE ACT I 418
32
PC1
SOFTWARE
EDO B:403 , CYS I:149 , TYR I:153 , GLY I:346 , LEU I:347 , GLU I:348 , EDO I:408
BINDING SITE FOR RESIDUE ACT I 419
[
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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