PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4GZ0
Asym. Unit
Info
Asym.Unit (597 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (102 KB)
Biol.Unit 5 (103 KB)
Biol.Unit 6 (103 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MUS MUSCULUS TDP2-DNA SUBSTRATE ANALOG (5'-6-AMINOHEXANOL) COMPLEX
Authors
:
M. J. Schellenberg, R. S. Williams
Date
:
05 Sep 12 (Deposition) - 31 Oct 12 (Release) - 02 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Protein-Dna Complex, Dna Repair, 5'-Dna End Processing, Endonuclease/Exonuclease/Phosphatase Domain, Eep Domain, 5'-Dna End Recognition, Eep, Endonuclease/Exonuclease/Phosphatase Domain, 5'-End Recognition, Nuclear, Hydrolase, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, C. D. Appel, S. Adhikari, P. D. Robertson, D. A. Ramsden, R. S. Williams
Mechanism Of Repair Of 5'-Topoisomerase Ii-Dna Adducts By Mammalian Tyrosyl-Dna Phosphodiesterase 2.
Nat. Struct. Mol. Biol. V. 19 1363 2012
[
close entry info
]
Hetero Components
(3, 141)
Info
All Hetero Components
1a: 6-AMINOHEXAN-1-OL (6AHa)
1b: 6-AMINOHEXAN-1-OL (6AHb)
1c: 6-AMINOHEXAN-1-OL (6AHc)
1d: 6-AMINOHEXAN-1-OL (6AHd)
1e: 6-AMINOHEXAN-1-OL (6AHe)
1f: 6-AMINOHEXAN-1-OL (6AHf)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
2k: ACETATE ION (ACTk)
2l: ACETATE ION (ACTl)
2m: ACETATE ION (ACTm)
2n: ACETATE ION (ACTn)
2o: ACETATE ION (ACTo)
2p: ACETATE ION (ACTp)
2q: ACETATE ION (ACTq)
2r: ACETATE ION (ACTr)
2s: ACETATE ION (ACTs)
2t: ACETATE ION (ACTt)
2u: ACETATE ION (ACTu)
2v: ACETATE ION (ACTv)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3aj: 1,2-ETHANEDIOL (EDOaj)
3ak: 1,2-ETHANEDIOL (EDOak)
3al: 1,2-ETHANEDIOL (EDOal)
3am: 1,2-ETHANEDIOL (EDOam)
3an: 1,2-ETHANEDIOL (EDOan)
3ao: 1,2-ETHANEDIOL (EDOao)
3ap: 1,2-ETHANEDIOL (EDOap)
3aq: 1,2-ETHANEDIOL (EDOaq)
3ar: 1,2-ETHANEDIOL (EDOar)
3as: 1,2-ETHANEDIOL (EDOas)
3at: 1,2-ETHANEDIOL (EDOat)
3au: 1,2-ETHANEDIOL (EDOau)
3av: 1,2-ETHANEDIOL (EDOav)
3aw: 1,2-ETHANEDIOL (EDOaw)
3ax: 1,2-ETHANEDIOL (EDOax)
3ay: 1,2-ETHANEDIOL (EDOay)
3az: 1,2-ETHANEDIOL (EDOaz)
3b: 1,2-ETHANEDIOL (EDOb)
3ba: 1,2-ETHANEDIOL (EDOba)
3bb: 1,2-ETHANEDIOL (EDObb)
3bc: 1,2-ETHANEDIOL (EDObc)
3bd: 1,2-ETHANEDIOL (EDObd)
3be: 1,2-ETHANEDIOL (EDObe)
3bf: 1,2-ETHANEDIOL (EDObf)
3bg: 1,2-ETHANEDIOL (EDObg)
3bh: 1,2-ETHANEDIOL (EDObh)
3bi: 1,2-ETHANEDIOL (EDObi)
3bj: 1,2-ETHANEDIOL (EDObj)
3bk: 1,2-ETHANEDIOL (EDObk)
3bl: 1,2-ETHANEDIOL (EDObl)
3bm: 1,2-ETHANEDIOL (EDObm)
3bn: 1,2-ETHANEDIOL (EDObn)
3bo: 1,2-ETHANEDIOL (EDObo)
3bp: 1,2-ETHANEDIOL (EDObp)
3bq: 1,2-ETHANEDIOL (EDObq)
3br: 1,2-ETHANEDIOL (EDObr)
3bs: 1,2-ETHANEDIOL (EDObs)
3bt: 1,2-ETHANEDIOL (EDObt)
3bu: 1,2-ETHANEDIOL (EDObu)
3bv: 1,2-ETHANEDIOL (EDObv)
3bw: 1,2-ETHANEDIOL (EDObw)
3bx: 1,2-ETHANEDIOL (EDObx)
3by: 1,2-ETHANEDIOL (EDOby)
3bz: 1,2-ETHANEDIOL (EDObz)
3c: 1,2-ETHANEDIOL (EDOc)
3ca: 1,2-ETHANEDIOL (EDOca)
3cb: 1,2-ETHANEDIOL (EDOcb)
3cc: 1,2-ETHANEDIOL (EDOcc)
3cd: 1,2-ETHANEDIOL (EDOcd)
3ce: 1,2-ETHANEDIOL (EDOce)
3cf: 1,2-ETHANEDIOL (EDOcf)
3cg: 1,2-ETHANEDIOL (EDOcg)
3ch: 1,2-ETHANEDIOL (EDOch)
3ci: 1,2-ETHANEDIOL (EDOci)
3cj: 1,2-ETHANEDIOL (EDOcj)
3ck: 1,2-ETHANEDIOL (EDOck)
3cl: 1,2-ETHANEDIOL (EDOcl)
3cm: 1,2-ETHANEDIOL (EDOcm)
3cn: 1,2-ETHANEDIOL (EDOcn)
3co: 1,2-ETHANEDIOL (EDOco)
3cp: 1,2-ETHANEDIOL (EDOcp)
3cq: 1,2-ETHANEDIOL (EDOcq)
3cr: 1,2-ETHANEDIOL (EDOcr)
3cs: 1,2-ETHANEDIOL (EDOcs)
3ct: 1,2-ETHANEDIOL (EDOct)
3cu: 1,2-ETHANEDIOL (EDOcu)
3cv: 1,2-ETHANEDIOL (EDOcv)
3cw: 1,2-ETHANEDIOL (EDOcw)
3cx: 1,2-ETHANEDIOL (EDOcx)
3cy: 1,2-ETHANEDIOL (EDOcy)
3cz: 1,2-ETHANEDIOL (EDOcz)
3d: 1,2-ETHANEDIOL (EDOd)
3da: 1,2-ETHANEDIOL (EDOda)
3db: 1,2-ETHANEDIOL (EDOdb)
3dc: 1,2-ETHANEDIOL (EDOdc)
3dd: 1,2-ETHANEDIOL (EDOdd)
3de: 1,2-ETHANEDIOL (EDOde)
3df: 1,2-ETHANEDIOL (EDOdf)
3dg: 1,2-ETHANEDIOL (EDOdg)
3dh: 1,2-ETHANEDIOL (EDOdh)
3di: 1,2-ETHANEDIOL (EDOdi)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6AH
6
Ligand/Ion
6-AMINOHEXAN-1-OL
2
ACT
22
Ligand/Ion
ACETATE ION
3
EDO
113
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(139, 139)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
103: LC4 (SOFTWARE)
104: LC5 (SOFTWARE)
105: LC6 (SOFTWARE)
106: LC7 (SOFTWARE)
107: LC8 (SOFTWARE)
108: LC9 (SOFTWARE)
109: MC1 (SOFTWARE)
110: MC2 (SOFTWARE)
111: MC3 (SOFTWARE)
112: MC4 (SOFTWARE)
113: MC5 (SOFTWARE)
114: MC6 (SOFTWARE)
115: MC7 (SOFTWARE)
116: MC8 (SOFTWARE)
117: MC9 (SOFTWARE)
118: NC1 (SOFTWARE)
119: NC2 (SOFTWARE)
120: NC3 (SOFTWARE)
121: NC4 (SOFTWARE)
122: NC5 (SOFTWARE)
123: NC6 (SOFTWARE)
124: NC7 (SOFTWARE)
125: NC8 (SOFTWARE)
126: NC9 (SOFTWARE)
127: OC1 (SOFTWARE)
128: OC2 (SOFTWARE)
129: OC3 (SOFTWARE)
130: OC4 (SOFTWARE)
131: OC5 (SOFTWARE)
132: OC6 (SOFTWARE)
133: OC7 (SOFTWARE)
134: OC8 (SOFTWARE)
135: OC9 (SOFTWARE)
136: PC1 (SOFTWARE)
137: PC2 (SOFTWARE)
138: PC3 (SOFTWARE)
139: PC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
GLU A:333 , GLY A:335 , HIS A:336 , LEU A:337
BINDING SITE FOR RESIDUE EDO A 401
002
AC2
SOFTWARE
ASP A:277 , TRP A:294 , GLN A:304 , TYR A:305 , ARG A:324 , HOH A:605
BINDING SITE FOR RESIDUE EDO A 402
003
AC3
SOFTWARE
TYR A:188 , MET A:214 , HOH A:642 , EDO H:102 , HOH H:201
BINDING SITE FOR RESIDUE EDO A 403
004
AC4
SOFTWARE
EDO A:409 , HOH A:527 , GLU G:348 , LYS G:349
BINDING SITE FOR RESIDUE EDO A 404
005
AC5
SOFTWARE
PHE A:209 , PRO A:210 , ASN A:211 , THR A:212 , GLU A:246 , ARG A:249
BINDING SITE FOR RESIDUE EDO A 405
006
AC6
SOFTWARE
SER A:341 , HOH A:575 , SER G:148
BINDING SITE FOR RESIDUE EDO A 406
007
AC7
SOFTWARE
CYS A:149 , GLU A:348 , ACT A:427 , TYR G:153 , ASP G:343 , LEU G:344
BINDING SITE FOR RESIDUE EDO A 407
008
AC8
SOFTWARE
THR A:179 , LYS A:196 , VAL A:199 , PHE A:201 , HOH A:593
BINDING SITE FOR RESIDUE EDO A 408
009
AC9
SOFTWARE
GLN A:304 , TYR A:305 , ASP A:308 , ALA A:311 , LEU A:344 , TRP A:360 , EDO A:404
BINDING SITE FOR RESIDUE EDO A 409
010
BC1
SOFTWARE
ACT A:423 , HOH A:575
BINDING SITE FOR RESIDUE EDO A 410
011
BC2
SOFTWARE
TYR A:153 , HOH A:501 , CYS G:149 , LEU G:152 , TYR G:153 , GLU G:348
BINDING SITE FOR RESIDUE EDO A 411
012
BC3
SOFTWARE
TRP A:307 , ASP A:308 , THR A:309 , ASN A:312 , ASN A:314 , LEU A:315 , ASP A:358
BINDING SITE FOR RESIDUE EDO A 412
013
BC4
SOFTWARE
ALA A:311 , ASN A:313 , LYS A:349
BINDING SITE FOR RESIDUE EDO A 413
014
BC5
SOFTWARE
LEU A:152 , TYR A:153 , ACT A:423 , HOH A:594 , HOH A:689 , LEU G:152 , TYR G:153 , EDO G:407
BINDING SITE FOR RESIDUE EDO A 414
015
BC6
SOFTWARE
THR A:309 , ILE A:317 , PRO A:318
BINDING SITE FOR RESIDUE EDO A 415
016
BC7
SOFTWARE
ASN A:138 , CYS A:352
BINDING SITE FOR RESIDUE EDO A 416
017
BC8
SOFTWARE
GLY A:227 , ASN A:228 , LEU A:370 , HOH A:666 , ARG E:144
BINDING SITE FOR RESIDUE EDO A 417
018
BC9
SOFTWARE
LEU A:347 , GLU A:348 , LYS A:349 , HOH A:509 , EDO G:405
BINDING SITE FOR RESIDUE EDO A 418
019
CC1
SOFTWARE
ILE I:206
BINDING SITE FOR RESIDUE EDO A 419
020
CC2
SOFTWARE
GLY A:183 , ASN A:184 , GLN I:204
BINDING SITE FOR RESIDUE EDO A 421
021
CC3
SOFTWARE
LEU A:350 , HOH A:509 , LYS G:301
BINDING SITE FOR RESIDUE EDO A 422
022
CC4
SOFTWARE
SER A:125 , TYR A:153 , PRO A:155 , LEU A:363 , EDO A:410 , EDO A:414 , HOH A:601 , LEU G:152
BINDING SITE FOR RESIDUE ACT A 423
023
CC5
SOFTWARE
HIS A:302 , ASP A:343 , HOH A:528 , ARG G:144 , GLY G:145 , SER G:148 , HOH G:522
BINDING SITE FOR RESIDUE ACT A 424
024
CC6
SOFTWARE
ARG A:144 , GLY A:145 , SER A:148 , GLU A:348 , HOH A:539 , HIS G:302 , ASP G:343
BINDING SITE FOR RESIDUE ACT A 425
025
CC7
SOFTWARE
TYR A:170 , HOH A:650 , GLY E:226 , ASN E:228 , LEU E:370 , HOH E:667
BINDING SITE FOR RESIDUE ACT A 426
026
CC8
SOFTWARE
CYS A:149 , TYR A:153 , LEU A:344 , VAL A:345 , GLY A:346 , LEU A:347 , EDO A:407
BINDING SITE FOR RESIDUE ACT A 427
027
CC9
SOFTWARE
TRP B:307 , ASP B:308 , ASN B:312 , ASN B:314 , LEU B:315 , ASP B:358
BINDING SITE FOR RESIDUE EDO B 401
028
DC1
SOFTWARE
PHE B:209 , PRO B:210 , ASN B:211 , THR B:212 , GLU B:246 , ARG B:249
BINDING SITE FOR RESIDUE EDO B 402
029
DC2
SOFTWARE
CYS B:149 , TYR B:153 , LEU B:344 , VAL B:345 , GLY B:346 , LEU B:347 , EDO I:414 , ACT I:419
BINDING SITE FOR RESIDUE EDO B 403
030
DC3
SOFTWARE
SER B:341 , EDO B:406 , SER I:148
BINDING SITE FOR RESIDUE EDO B 404
031
DC4
SOFTWARE
SER B:125 , TYR B:153 , EDO B:406 , HOH B:573 , LEU I:152
BINDING SITE FOR RESIDUE EDO B 405
032
DC5
SOFTWARE
THR B:123 , EDO B:404 , EDO B:405 , HOH B:619 , ALA I:151
BINDING SITE FOR RESIDUE EDO B 406
033
DC6
SOFTWARE
ARG B:144 , GLU B:348 , HIS I:302 , ASP I:343
BINDING SITE FOR RESIDUE EDO B 408
034
DC7
SOFTWARE
GLU B:205 , ILE B:206 , THR G:253
BINDING SITE FOR RESIDUE EDO B 409
035
DC8
SOFTWARE
ARG B:241 , GLU B:279 , HOH B:597 , HOH B:639
BINDING SITE FOR RESIDUE EDO B 410
036
DC9
SOFTWARE
ARG B:198 , LYS B:200 , SER B:224 , LEU B:225 , GLY B:226 , GLY B:227 , HOH B:602
BINDING SITE FOR RESIDUE EDO B 411
037
EC1
SOFTWARE
LEU B:286 , PRO B:287 , VAL B:290 , PHE B:291 , HOH B:528
BINDING SITE FOR RESIDUE EDO B 412
038
EC2
SOFTWARE
TYR B:188
BINDING SITE FOR RESIDUE EDO B 413
039
EC3
SOFTWARE
HIS B:302 , SER B:341 , LEU B:342 , HOH I:578
BINDING SITE FOR RESIDUE EDO B 414
040
EC4
SOFTWARE
TYR B:178 , THR B:179 , ILE B:180 , LYS B:196
BINDING SITE FOR RESIDUE EDO B 415
041
EC5
SOFTWARE
PRO B:165 , PRO B:166 , ALA B:169
BINDING SITE FOR RESIDUE EDO B 416
042
EC6
SOFTWARE
ASN B:184 , MET B:215 , ASN B:217 , HOH B:576 , GLU G:260
BINDING SITE FOR RESIDUE EDO B 417
043
EC7
SOFTWARE
ARG B:144 , SER B:148 , ARG B:174
BINDING SITE FOR RESIDUE EDO B 418
044
EC8
SOFTWARE
CYS B:147 , ALA B:151 , ARG B:174 , ALA B:175 , SER B:177 , TYR B:178 , HOH B:521 , HOH B:559
BINDING SITE FOR RESIDUE EDO B 419
045
EC9
SOFTWARE
LEU B:297 , GLY B:298 , HOH B:584 , HOH B:586 , GLN E:278 , LYS E:282
BINDING SITE FOR RESIDUE EDO B 420
046
FC1
SOFTWARE
TYR B:305 , LYS B:322
BINDING SITE FOR RESIDUE EDO B 421
047
FC2
SOFTWARE
CYS B:168 , GLU B:185 , PHE B:189
BINDING SITE FOR RESIDUE EDO B 422
048
FC3
SOFTWARE
THR B:179 , LEU B:194 , LYS B:196 , VAL B:199 , PHE B:201 , HOH B:558
BINDING SITE FOR RESIDUE ACT B 423
049
FC4
SOFTWARE
ILE B:181 , PHE B:201 , PRO G:210
BINDING SITE FOR RESIDUE ACT B 424
050
FC5
SOFTWARE
ARG B:276 , ASP B:277 , HIS B:323 , HOH B:512 , HOH B:544
BINDING SITE FOR RESIDUE ACT B 425
051
FC6
SOFTWARE
GLU B:162 , SER B:239 , DC C:2 , DG C:4 , HOH C:204 , DT J:8
BINDING SITE FOR RESIDUE 6AH C 101
052
FC7
SOFTWARE
GLU A:162 , SER A:239 , DC D:2 , DG D:4 , DA D:5 , HOH D:201 , DT H:8
BINDING SITE FOR RESIDUE 6AH D 101
053
FC8
SOFTWARE
DA D:6 , DT D:7 , EDO D:103 , THR G:240 , GLU G:242 , HIS G:243
BINDING SITE FOR RESIDUE EDO D 102
054
FC9
SOFTWARE
DT D:7 , EDO D:102 , HOH D:210 , DA H:5 , HOH H:203
BINDING SITE FOR RESIDUE EDO D 103
055
GC1
SOFTWARE
THR A:240 , GLU A:242 , DA D:5
BINDING SITE FOR RESIDUE EDO D 104
056
GC2
SOFTWARE
ASN E:289 , PHE E:291 , PHE E:330 , ARG E:331 , ALA E:332 , GLU E:333 , HOH E:504 , HOH E:577 , EDO I:405
BINDING SITE FOR RESIDUE EDO E 401
057
GC3
SOFTWARE
TRP E:307 , ASP E:308 , ASN E:312 , ASN E:314 , LEU E:315 , ASP E:358
BINDING SITE FOR RESIDUE EDO E 402
058
GC4
SOFTWARE
TYR E:153 , ASP E:343 , HOH E:664 , CYS K:149 , LEU K:152 , GLU K:348 , EDO K:412
BINDING SITE FOR RESIDUE EDO E 403
059
GC5
SOFTWARE
PHE E:209 , PRO E:210 , ASN E:211 , GLU E:246 , ARG E:249
BINDING SITE FOR RESIDUE EDO E 404
060
GC6
SOFTWARE
ASP E:263 , THR E:265 , ARG E:331 , ALA E:332 , GLU E:333
BINDING SITE FOR RESIDUE EDO E 405
061
GC7
SOFTWARE
GLN E:304 , TYR E:305 , ASP E:308 , LEU E:344 , TRP E:360
BINDING SITE FOR RESIDUE EDO E 406
062
GC8
SOFTWARE
SER E:148 , ALA E:151 , SER K:341 , HOH K:528 , HOH K:579
BINDING SITE FOR RESIDUE EDO E 407
063
GC9
SOFTWARE
ACT E:422 , EDO K:403
BINDING SITE FOR RESIDUE EDO E 408
064
HC1
SOFTWARE
VAL A:369 , GLY E:133 , LEU E:134 , GLY E:136 , HOH E:549 , HOH E:645
BINDING SITE FOR RESIDUE EDO E 409
065
HC2
SOFTWARE
GLY E:335 , ILE E:338 , HOH E:545 , HOH E:551
BINDING SITE FOR RESIDUE EDO E 410
066
HC3
SOFTWARE
LYS E:299 , GLN E:304 , EDO E:418 , HOH E:646
BINDING SITE FOR RESIDUE EDO E 411
067
HC4
SOFTWARE
HIS E:302 , SER E:341 , LEU E:342
BINDING SITE FOR RESIDUE EDO E 412
068
HC5
SOFTWARE
GLU E:295 , PHE E:296
BINDING SITE FOR RESIDUE EDO E 413
069
HC6
SOFTWARE
CYS E:149 , TYR E:153 , VAL E:345 , GLY E:346 , LEU E:347 , EDO K:409 , EDO K:412
BINDING SITE FOR RESIDUE EDO E 414
070
HC7
SOFTWARE
ASP E:277 , TRP E:294 , GLN E:304 , ARG E:324 , EDO E:418 , HOH E:624
BINDING SITE FOR RESIDUE EDO E 415
071
HC8
SOFTWARE
CYS E:283 , GLY E:285 , PRO E:287 , HOH E:522 , ARG I:144
BINDING SITE FOR RESIDUE EDO E 416
072
HC9
SOFTWARE
LYS A:173 , SER E:264 , GLU E:333 , HIS E:336 , HOH E:520 , HOH E:524 , HOH E:571 , HOH E:627
BINDING SITE FOR RESIDUE EDO E 417
073
IC1
SOFTWARE
ASP E:277 , LYS E:299 , EDO E:411 , EDO E:415 , HOH E:624
BINDING SITE FOR RESIDUE EDO E 418
074
IC2
SOFTWARE
ILE E:181 , PHE E:201 , HOH E:666
BINDING SITE FOR RESIDUE EDO E 419
075
IC3
SOFTWARE
ASN E:313 , ARG E:316 , CYS E:352 , GLY E:353 , ARG E:354 , HOH E:532
BINDING SITE FOR RESIDUE EDO E 420
076
IC4
SOFTWARE
THR E:179 , LEU E:194 , LYS E:196 , VAL E:199 , PHE E:201 , HOH E:607 , HOH E:649
BINDING SITE FOR RESIDUE ACT E 421
077
IC5
SOFTWARE
SER E:125 , TYR E:153 , EDO E:408 , LEU K:152
BINDING SITE FOR RESIDUE ACT E 422
078
IC6
SOFTWARE
LYS E:172 , ILE E:180 , HOH E:546
BINDING SITE FOR RESIDUE ACT E 423
079
IC7
SOFTWARE
ARG E:276 , ASP E:277 , LYS E:322 , HIS E:323 , HOH E:543
BINDING SITE FOR RESIDUE ACT E 424
080
IC8
SOFTWARE
GLU E:162 , SER E:239 , DC F:2 , DG F:4 , DT L:8
BINDING SITE FOR RESIDUE 6AH F 101
081
IC9
SOFTWARE
DA F:5 , HOH F:205 , HOH F:212 , HOH F:222
BINDING SITE FOR RESIDUE EDO F 102
082
JC1
SOFTWARE
TRP K:307 , ASP K:308 , THR K:309 , ASN K:312 , ASN K:314 , LEU K:315 , ASP K:358
BINDING SITE FOR RESIDUE EDO K 401
083
JC2
SOFTWARE
ARG E:144 , GLY E:145 , SER E:148 , GLU E:348 , HIS K:302 , ASP K:343 , HOH K:514 , HOH K:579
BINDING SITE FOR RESIDUE EDO K 402
084
JC3
SOFTWARE
SER E:341 , EDO E:408 , HOH E:617 , SER K:148 , ALA K:151
BINDING SITE FOR RESIDUE EDO K 403
085
JC4
SOFTWARE
HIS E:302 , ARG K:144 , GLY K:145 , SER K:148 , HOH K:519
BINDING SITE FOR RESIDUE EDO K 404
086
JC5
SOFTWARE
LEU E:347 , GLU E:348 , LYS E:349 , ALA K:311 , EDO K:408 , HOH K:516
BINDING SITE FOR RESIDUE EDO K 405
087
JC6
SOFTWARE
TYR K:153 , SER K:154
BINDING SITE FOR RESIDUE EDO K 406
088
JC7
SOFTWARE
LEU K:139 , TYR K:170
BINDING SITE FOR RESIDUE EDO K 407
089
JC8
SOFTWARE
TYR K:305 , ASP K:308 , ALA K:311 , LEU K:344 , TRP K:360 , EDO K:405
BINDING SITE FOR RESIDUE EDO K 408
090
JC9
SOFTWARE
CYS E:149 , GLU E:348 , EDO E:414 , TYR K:153 , ASP K:343 , LEU K:344
BINDING SITE FOR RESIDUE EDO K 409
091
KC1
SOFTWARE
THR K:309 , ILE K:317 , PRO K:318 , ALA K:319 , ALA K:320
BINDING SITE FOR RESIDUE EDO K 410
092
KC2
SOFTWARE
GLN K:304 , TYR K:305 , HOH K:626
BINDING SITE FOR RESIDUE EDO K 411
093
KC3
SOFTWARE
EDO E:403 , EDO E:414 , CYS K:149 , TYR K:153 , LEU K:344 , VAL K:345 , GLY K:346 , LEU K:347
BINDING SITE FOR RESIDUE EDO K 412
094
KC4
SOFTWARE
GLY G:136 , PRO G:140 , TYR G:170 , GLY K:136 , CYS K:137
BINDING SITE FOR RESIDUE EDO K 413
095
KC5
SOFTWARE
ARG K:241 , ARG K:276 , GLN K:278 , ACT K:415 , HOH K:502 , HOH K:580
BINDING SITE FOR RESIDUE EDO K 414
096
KC6
SOFTWARE
ASP K:277 , GLN K:278 , HIS K:323 , EDO K:414
BINDING SITE FOR RESIDUE ACT K 415
097
KC7
SOFTWARE
LYS K:310 , ALA K:311 , LYS K:349
BINDING SITE FOR RESIDUE ACT K 416
098
KC8
SOFTWARE
PHE K:209 , PRO K:210 , ASN K:211 , GLU K:246 , ARG K:249 , THR K:253
BINDING SITE FOR RESIDUE ACT K 417
099
KC9
SOFTWARE
HOH F:220 , GLU K:162 , ARG K:216 , SER K:239 , DC L:2
BINDING SITE FOR RESIDUE 6AH L 101
100
LC1
SOFTWARE
PHE G:209 , PRO G:210 , ASN G:211 , GLU G:246 , ARG G:249
BINDING SITE FOR RESIDUE EDO G 401
101
LC2
SOFTWARE
PHE G:296 , EDO G:404
BINDING SITE FOR RESIDUE EDO G 402
102
LC3
SOFTWARE
SER A:148 , ALA A:151 , SER G:341 , EDO G:406 , HOH G:524 , HOH G:594
BINDING SITE FOR RESIDUE EDO G 403
103
LC4
SOFTWARE
GLY G:298 , EDO G:402 , HOH G:601
BINDING SITE FOR RESIDUE EDO G 404
104
LC5
SOFTWARE
EDO A:418 , TYR G:305 , ASP G:308 , ALA G:311 , TRP G:360
BINDING SITE FOR RESIDUE EDO G 405
105
LC6
SOFTWARE
ALA A:151 , EDO G:403 , EDO G:407 , HOH G:524
BINDING SITE FOR RESIDUE EDO G 406
106
LC7
SOFTWARE
LEU A:152 , EDO A:414 , SER G:125 , TYR G:153 , SER G:154 , PRO G:155 , EDO G:406
BINDING SITE FOR RESIDUE EDO G 407
107
LC8
SOFTWARE
GLU G:205 , LYS G:257
BINDING SITE FOR RESIDUE EDO G 408
108
LC9
SOFTWARE
TRP G:307 , ASP G:308 , ASN G:312 , ASN G:314 , LEU G:315 , ASP G:358
BINDING SITE FOR RESIDUE EDO G 409
109
MC1
SOFTWARE
ASP A:351 , LEU G:297 , GLY G:298 , PRO G:300
BINDING SITE FOR RESIDUE EDO G 410
110
MC2
SOFTWARE
ASP G:135 , ASN G:314 , ARG G:316 , ARG G:354
BINDING SITE FOR RESIDUE EDO G 411
111
MC3
SOFTWARE
ARG G:276 , ASP G:277 , HIS G:323 , HOH G:526
BINDING SITE FOR RESIDUE ACT G 412
112
MC4
SOFTWARE
ARG G:241 , GLU G:279
BINDING SITE FOR RESIDUE ACT G 413
113
MC5
SOFTWARE
LYS G:310 , ALA G:311 , LYS G:349
BINDING SITE FOR RESIDUE ACT G 414
114
MC6
SOFTWARE
GLU G:162 , SER G:239 , DC H:2
BINDING SITE FOR RESIDUE 6AH H 101
115
MC7
SOFTWARE
EDO A:403 , DT H:7 , DT H:8
BINDING SITE FOR RESIDUE EDO H 102
116
MC8
SOFTWARE
MET A:214 , DT H:7 , HOH H:201 , HOH H:202 , HOH H:206
BINDING SITE FOR RESIDUE EDO H 103
117
MC9
SOFTWARE
DC D:9 , DC H:2 , DG H:4
BINDING SITE FOR RESIDUE EDO H 104
118
NC1
SOFTWARE
ALA I:311 , ASN I:313 , LYS I:349 , EDO I:403
BINDING SITE FOR RESIDUE EDO I 401
119
NC2
SOFTWARE
THR I:179 , LEU I:194 , LYS I:196 , VAL I:199 , PHE I:201
BINDING SITE FOR RESIDUE EDO I 402
120
NC3
SOFTWARE
ALA I:311 , LEU I:347 , PHE I:355 , EDO I:401 , EDO I:409 , EDO I:410
BINDING SITE FOR RESIDUE EDO I 403
121
NC4
SOFTWARE
GLN I:304 , TYR I:305 , ASP I:308 , ALA I:311 , TRP I:360 , EDO I:410
BINDING SITE FOR RESIDUE EDO I 404
122
NC5
SOFTWARE
PHE E:291 , GLU E:334 , EDO E:401 , ALA I:169 , ACT I:420 , HOH I:503
BINDING SITE FOR RESIDUE EDO I 405
123
NC6
SOFTWARE
SER B:148 , SER I:341 , HOH I:550
BINDING SITE FOR RESIDUE EDO I 406
124
NC7
SOFTWARE
GLU A:185 , GLU A:186 , CYS I:168 , ILE I:180
BINDING SITE FOR RESIDUE EDO I 407
125
NC8
SOFTWARE
TYR B:153 , ASP B:343 , SER I:148 , CYS I:149 , LEU I:152 , GLU I:348 , ACT I:418 , ACT I:419 , HOH I:542
BINDING SITE FOR RESIDUE EDO I 408
126
NC9
SOFTWARE
LEU B:347 , HOH B:542 , LYS I:349 , EDO I:403 , HOH I:512
BINDING SITE FOR RESIDUE EDO I 409
127
OC1
SOFTWARE
GLU B:348 , LYS B:349 , ALA I:311 , EDO I:403 , EDO I:404 , HOH I:517
BINDING SITE FOR RESIDUE EDO I 410
128
OC2
SOFTWARE
ASP I:277 , VAL I:280 , GLU I:295 , ARG I:324 , ARG I:327 , HOH I:568 , HOH I:611
BINDING SITE FOR RESIDUE EDO I 411
129
OC3
SOFTWARE
CYS E:283 , GLU I:141 , ARG I:144 , ASP I:351
BINDING SITE FOR RESIDUE EDO I 412
130
OC4
SOFTWARE
CYS A:168 , LYS A:172 , THR A:182 , ASN A:184 , GLU A:185 , PHE A:189 , GLU I:185
BINDING SITE FOR RESIDUE EDO I 413
131
OC5
SOFTWARE
CYS B:149 , LEU B:152 , GLU B:348 , EDO B:403 , HOH B:567 , TYR I:153 , ASP I:343
BINDING SITE FOR RESIDUE EDO I 414
132
OC6
SOFTWARE
LYS I:172 , HOH I:624
BINDING SITE FOR RESIDUE EDO I 415
133
OC7
SOFTWARE
ASP I:277 , GLN I:304 , ARG I:324
BINDING SITE FOR RESIDUE EDO I 416
134
OC8
SOFTWARE
PHE I:209 , PRO I:210 , ASN I:211 , GLU I:246 , ARG I:249 , THR I:253
BINDING SITE FOR RESIDUE ACT I 417
135
OC9
SOFTWARE
HIS B:302 , ASP B:343 , GLY I:145 , EDO I:408 , HOH I:542
BINDING SITE FOR RESIDUE ACT I 418
136
PC1
SOFTWARE
EDO B:403 , CYS I:149 , TYR I:153 , GLY I:346 , LEU I:347 , GLU I:348 , EDO I:408
BINDING SITE FOR RESIDUE ACT I 419
137
PC2
SOFTWARE
PRO I:165 , LYS I:172 , EDO I:405
BINDING SITE FOR RESIDUE ACT I 420
138
PC3
SOFTWARE
GLU I:162 , SER I:239 , DC J:2 , DG J:4 , HOH J:206
BINDING SITE FOR RESIDUE 6AH J 101
139
PC4
SOFTWARE
LEU I:134 , DC J:2
BINDING SITE FOR RESIDUE EDO J 102
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (597 KB)
Header - Asym.Unit
Biol.Unit 1 (105 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
Biol.Unit 3 (105 KB)
Header - Biol.Unit 3
Biol.Unit 4 (102 KB)
Header - Biol.Unit 4
Biol.Unit 5 (103 KB)
Header - Biol.Unit 5
Biol.Unit 6 (103 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4GZ0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help