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4GZ0
Biol. Unit 3
Info
Asym.Unit (597 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (102 KB)
Biol.Unit 5 (103 KB)
Biol.Unit 6 (103 KB)
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Title
:
MUS MUSCULUS TDP2-DNA SUBSTRATE ANALOG (5'-6-AMINOHEXANOL) COMPLEX
Authors
:
M. J. Schellenberg, R. S. Williams
Date
:
05 Sep 12 (Deposition) - 31 Oct 12 (Release) - 02 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Protein-Dna Complex, Dna Repair, 5'-Dna End Processing, Endonuclease/Exonuclease/Phosphatase Domain, Eep Domain, 5'-Dna End Recognition, Eep, Endonuclease/Exonuclease/Phosphatase Domain, 5'-End Recognition, Nuclear, Hydrolase, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, C. D. Appel, S. Adhikari, P. D. Robertson, D. A. Ramsden, R. S. Williams
Mechanism Of Repair Of 5'-Topoisomerase Ii-Dna Adducts By Mammalian Tyrosyl-Dna Phosphodiesterase 2.
Nat. Struct. Mol. Biol. V. 19 1363 2012
[
close entry info
]
Hetero Components
(3, 26)
Info
All Hetero Components
1a: 6-AMINOHEXAN-1-OL (6AHa)
1b: 6-AMINOHEXAN-1-OL (6AHb)
1c: 6-AMINOHEXAN-1-OL (6AHc)
1d: 6-AMINOHEXAN-1-OL (6AHd)
1e: 6-AMINOHEXAN-1-OL (6AHe)
1f: 6-AMINOHEXAN-1-OL (6AHf)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
2k: ACETATE ION (ACTk)
2l: ACETATE ION (ACTl)
2m: ACETATE ION (ACTm)
2n: ACETATE ION (ACTn)
2o: ACETATE ION (ACTo)
2p: ACETATE ION (ACTp)
2q: ACETATE ION (ACTq)
2r: ACETATE ION (ACTr)
2s: ACETATE ION (ACTs)
2t: ACETATE ION (ACTt)
2u: ACETATE ION (ACTu)
2v: ACETATE ION (ACTv)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3aj: 1,2-ETHANEDIOL (EDOaj)
3ak: 1,2-ETHANEDIOL (EDOak)
3al: 1,2-ETHANEDIOL (EDOal)
3am: 1,2-ETHANEDIOL (EDOam)
3an: 1,2-ETHANEDIOL (EDOan)
3ao: 1,2-ETHANEDIOL (EDOao)
3ap: 1,2-ETHANEDIOL (EDOap)
3aq: 1,2-ETHANEDIOL (EDOaq)
3ar: 1,2-ETHANEDIOL (EDOar)
3as: 1,2-ETHANEDIOL (EDOas)
3at: 1,2-ETHANEDIOL (EDOat)
3au: 1,2-ETHANEDIOL (EDOau)
3av: 1,2-ETHANEDIOL (EDOav)
3aw: 1,2-ETHANEDIOL (EDOaw)
3ax: 1,2-ETHANEDIOL (EDOax)
3ay: 1,2-ETHANEDIOL (EDOay)
3az: 1,2-ETHANEDIOL (EDOaz)
3b: 1,2-ETHANEDIOL (EDOb)
3ba: 1,2-ETHANEDIOL (EDOba)
3bb: 1,2-ETHANEDIOL (EDObb)
3bc: 1,2-ETHANEDIOL (EDObc)
3bd: 1,2-ETHANEDIOL (EDObd)
3be: 1,2-ETHANEDIOL (EDObe)
3bf: 1,2-ETHANEDIOL (EDObf)
3bg: 1,2-ETHANEDIOL (EDObg)
3bh: 1,2-ETHANEDIOL (EDObh)
3bi: 1,2-ETHANEDIOL (EDObi)
3bj: 1,2-ETHANEDIOL (EDObj)
3bk: 1,2-ETHANEDIOL (EDObk)
3bl: 1,2-ETHANEDIOL (EDObl)
3bm: 1,2-ETHANEDIOL (EDObm)
3bn: 1,2-ETHANEDIOL (EDObn)
3bo: 1,2-ETHANEDIOL (EDObo)
3bp: 1,2-ETHANEDIOL (EDObp)
3bq: 1,2-ETHANEDIOL (EDObq)
3br: 1,2-ETHANEDIOL (EDObr)
3bs: 1,2-ETHANEDIOL (EDObs)
3bt: 1,2-ETHANEDIOL (EDObt)
3bu: 1,2-ETHANEDIOL (EDObu)
3bv: 1,2-ETHANEDIOL (EDObv)
3bw: 1,2-ETHANEDIOL (EDObw)
3bx: 1,2-ETHANEDIOL (EDObx)
3by: 1,2-ETHANEDIOL (EDOby)
3bz: 1,2-ETHANEDIOL (EDObz)
3c: 1,2-ETHANEDIOL (EDOc)
3ca: 1,2-ETHANEDIOL (EDOca)
3cb: 1,2-ETHANEDIOL (EDOcb)
3cc: 1,2-ETHANEDIOL (EDOcc)
3cd: 1,2-ETHANEDIOL (EDOcd)
3ce: 1,2-ETHANEDIOL (EDOce)
3cf: 1,2-ETHANEDIOL (EDOcf)
3cg: 1,2-ETHANEDIOL (EDOcg)
3ch: 1,2-ETHANEDIOL (EDOch)
3ci: 1,2-ETHANEDIOL (EDOci)
3cj: 1,2-ETHANEDIOL (EDOcj)
3ck: 1,2-ETHANEDIOL (EDOck)
3cl: 1,2-ETHANEDIOL (EDOcl)
3cm: 1,2-ETHANEDIOL (EDOcm)
3cn: 1,2-ETHANEDIOL (EDOcn)
3co: 1,2-ETHANEDIOL (EDOco)
3cp: 1,2-ETHANEDIOL (EDOcp)
3cq: 1,2-ETHANEDIOL (EDOcq)
3cr: 1,2-ETHANEDIOL (EDOcr)
3cs: 1,2-ETHANEDIOL (EDOcs)
3ct: 1,2-ETHANEDIOL (EDOct)
3cu: 1,2-ETHANEDIOL (EDOcu)
3cv: 1,2-ETHANEDIOL (EDOcv)
3cw: 1,2-ETHANEDIOL (EDOcw)
3cx: 1,2-ETHANEDIOL (EDOcx)
3cy: 1,2-ETHANEDIOL (EDOcy)
3cz: 1,2-ETHANEDIOL (EDOcz)
3d: 1,2-ETHANEDIOL (EDOd)
3da: 1,2-ETHANEDIOL (EDOda)
3db: 1,2-ETHANEDIOL (EDOdb)
3dc: 1,2-ETHANEDIOL (EDOdc)
3dd: 1,2-ETHANEDIOL (EDOdd)
3de: 1,2-ETHANEDIOL (EDOde)
3df: 1,2-ETHANEDIOL (EDOdf)
3dg: 1,2-ETHANEDIOL (EDOdg)
3dh: 1,2-ETHANEDIOL (EDOdh)
3di: 1,2-ETHANEDIOL (EDOdi)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6AH
1
Ligand/Ion
6-AMINOHEXAN-1-OL
2
ACT
4
Ligand/Ion
ACETATE ION
3
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: BC8 (SOFTWARE)
02: CC7 (SOFTWARE)
03: EC9 (SOFTWARE)
04: GC2 (SOFTWARE)
05: GC3 (SOFTWARE)
06: GC4 (SOFTWARE)
07: GC5 (SOFTWARE)
08: GC6 (SOFTWARE)
09: GC7 (SOFTWARE)
10: GC8 (SOFTWARE)
11: GC9 (SOFTWARE)
12: HC1 (SOFTWARE)
13: HC2 (SOFTWARE)
14: HC3 (SOFTWARE)
15: HC4 (SOFTWARE)
16: HC5 (SOFTWARE)
17: HC6 (SOFTWARE)
18: HC7 (SOFTWARE)
19: HC8 (SOFTWARE)
20: HC9 (SOFTWARE)
21: IC1 (SOFTWARE)
22: IC2 (SOFTWARE)
23: IC3 (SOFTWARE)
24: IC4 (SOFTWARE)
25: IC5 (SOFTWARE)
26: IC6 (SOFTWARE)
27: IC7 (SOFTWARE)
28: IC8 (SOFTWARE)
29: IC9 (SOFTWARE)
30: JC2 (SOFTWARE)
31: JC3 (SOFTWARE)
32: JC4 (SOFTWARE)
33: JC5 (SOFTWARE)
34: JC9 (SOFTWARE)
35: KC3 (SOFTWARE)
36: KC9 (SOFTWARE)
37: NC5 (SOFTWARE)
38: OC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
GLY A:227 , ASN A:228 , LEU A:370 , HOH A:666 , ARG E:144
BINDING SITE FOR RESIDUE EDO A 417
02
CC7
SOFTWARE
TYR A:170 , HOH A:650 , GLY E:226 , ASN E:228 , LEU E:370 , HOH E:667
BINDING SITE FOR RESIDUE ACT A 426
03
EC9
SOFTWARE
LEU B:297 , GLY B:298 , HOH B:584 , HOH B:586 , GLN E:278 , LYS E:282
BINDING SITE FOR RESIDUE EDO B 420
04
GC2
SOFTWARE
ASN E:289 , PHE E:291 , PHE E:330 , ARG E:331 , ALA E:332 , GLU E:333 , HOH E:504 , HOH E:577 , EDO I:405
BINDING SITE FOR RESIDUE EDO E 401
05
GC3
SOFTWARE
TRP E:307 , ASP E:308 , ASN E:312 , ASN E:314 , LEU E:315 , ASP E:358
BINDING SITE FOR RESIDUE EDO E 402
06
GC4
SOFTWARE
TYR E:153 , ASP E:343 , HOH E:664 , CYS K:149 , LEU K:152 , GLU K:348 , EDO K:412
BINDING SITE FOR RESIDUE EDO E 403
07
GC5
SOFTWARE
PHE E:209 , PRO E:210 , ASN E:211 , GLU E:246 , ARG E:249
BINDING SITE FOR RESIDUE EDO E 404
08
GC6
SOFTWARE
ASP E:263 , THR E:265 , ARG E:331 , ALA E:332 , GLU E:333
BINDING SITE FOR RESIDUE EDO E 405
09
GC7
SOFTWARE
GLN E:304 , TYR E:305 , ASP E:308 , LEU E:344 , TRP E:360
BINDING SITE FOR RESIDUE EDO E 406
10
GC8
SOFTWARE
SER E:148 , ALA E:151 , SER K:341 , HOH K:528 , HOH K:579
BINDING SITE FOR RESIDUE EDO E 407
11
GC9
SOFTWARE
ACT E:422 , EDO K:403
BINDING SITE FOR RESIDUE EDO E 408
12
HC1
SOFTWARE
VAL A:369 , GLY E:133 , LEU E:134 , GLY E:136 , HOH E:549 , HOH E:645
BINDING SITE FOR RESIDUE EDO E 409
13
HC2
SOFTWARE
GLY E:335 , ILE E:338 , HOH E:545 , HOH E:551
BINDING SITE FOR RESIDUE EDO E 410
14
HC3
SOFTWARE
LYS E:299 , GLN E:304 , EDO E:418 , HOH E:646
BINDING SITE FOR RESIDUE EDO E 411
15
HC4
SOFTWARE
HIS E:302 , SER E:341 , LEU E:342
BINDING SITE FOR RESIDUE EDO E 412
16
HC5
SOFTWARE
GLU E:295 , PHE E:296
BINDING SITE FOR RESIDUE EDO E 413
17
HC6
SOFTWARE
CYS E:149 , TYR E:153 , VAL E:345 , GLY E:346 , LEU E:347 , EDO K:409 , EDO K:412
BINDING SITE FOR RESIDUE EDO E 414
18
HC7
SOFTWARE
ASP E:277 , TRP E:294 , GLN E:304 , ARG E:324 , EDO E:418 , HOH E:624
BINDING SITE FOR RESIDUE EDO E 415
19
HC8
SOFTWARE
CYS E:283 , GLY E:285 , PRO E:287 , HOH E:522 , ARG I:144
BINDING SITE FOR RESIDUE EDO E 416
20
HC9
SOFTWARE
LYS A:173 , SER E:264 , GLU E:333 , HIS E:336 , HOH E:520 , HOH E:524 , HOH E:571 , HOH E:627
BINDING SITE FOR RESIDUE EDO E 417
21
IC1
SOFTWARE
ASP E:277 , LYS E:299 , EDO E:411 , EDO E:415 , HOH E:624
BINDING SITE FOR RESIDUE EDO E 418
22
IC2
SOFTWARE
ILE E:181 , PHE E:201 , HOH E:666
BINDING SITE FOR RESIDUE EDO E 419
23
IC3
SOFTWARE
ASN E:313 , ARG E:316 , CYS E:352 , GLY E:353 , ARG E:354 , HOH E:532
BINDING SITE FOR RESIDUE EDO E 420
24
IC4
SOFTWARE
THR E:179 , LEU E:194 , LYS E:196 , VAL E:199 , PHE E:201 , HOH E:607 , HOH E:649
BINDING SITE FOR RESIDUE ACT E 421
25
IC5
SOFTWARE
SER E:125 , TYR E:153 , EDO E:408 , LEU K:152
BINDING SITE FOR RESIDUE ACT E 422
26
IC6
SOFTWARE
LYS E:172 , ILE E:180 , HOH E:546
BINDING SITE FOR RESIDUE ACT E 423
27
IC7
SOFTWARE
ARG E:276 , ASP E:277 , LYS E:322 , HIS E:323 , HOH E:543
BINDING SITE FOR RESIDUE ACT E 424
28
IC8
SOFTWARE
GLU E:162 , SER E:239 , DC F:2 , DG F:4 , DT L:8
BINDING SITE FOR RESIDUE 6AH F 101
29
IC9
SOFTWARE
DA F:5 , HOH F:205 , HOH F:212 , HOH F:222
BINDING SITE FOR RESIDUE EDO F 102
30
JC2
SOFTWARE
ARG E:144 , GLY E:145 , SER E:148 , GLU E:348 , HIS K:302 , ASP K:343 , HOH K:514 , HOH K:579
BINDING SITE FOR RESIDUE EDO K 402
31
JC3
SOFTWARE
SER E:341 , EDO E:408 , HOH E:617 , SER K:148 , ALA K:151
BINDING SITE FOR RESIDUE EDO K 403
32
JC4
SOFTWARE
HIS E:302 , ARG K:144 , GLY K:145 , SER K:148 , HOH K:519
BINDING SITE FOR RESIDUE EDO K 404
33
JC5
SOFTWARE
LEU E:347 , GLU E:348 , LYS E:349 , ALA K:311 , EDO K:408 , HOH K:516
BINDING SITE FOR RESIDUE EDO K 405
34
JC9
SOFTWARE
CYS E:149 , GLU E:348 , EDO E:414 , TYR K:153 , ASP K:343 , LEU K:344
BINDING SITE FOR RESIDUE EDO K 409
35
KC3
SOFTWARE
EDO E:403 , EDO E:414 , CYS K:149 , TYR K:153 , LEU K:344 , VAL K:345 , GLY K:346 , LEU K:347
BINDING SITE FOR RESIDUE EDO K 412
36
KC9
SOFTWARE
HOH F:220 , GLU K:162 , ARG K:216 , SER K:239 , DC L:2
BINDING SITE FOR RESIDUE 6AH L 101
37
NC5
SOFTWARE
PHE E:291 , GLU E:334 , EDO E:401 , ALA I:169 , ACT I:420 , HOH I:503
BINDING SITE FOR RESIDUE EDO I 405
38
OC3
SOFTWARE
CYS E:283 , GLU I:141 , ARG I:144 , ASP I:351
BINDING SITE FOR RESIDUE EDO I 412
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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[
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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