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4GZ0
Biol. Unit 5
Info
Asym.Unit (597 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (102 KB)
Biol.Unit 5 (103 KB)
Biol.Unit 6 (103 KB)
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Title
:
MUS MUSCULUS TDP2-DNA SUBSTRATE ANALOG (5'-6-AMINOHEXANOL) COMPLEX
Authors
:
M. J. Schellenberg, R. S. Williams
Date
:
05 Sep 12 (Deposition) - 31 Oct 12 (Release) - 02 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Protein-Dna Complex, Dna Repair, 5'-Dna End Processing, Endonuclease/Exonuclease/Phosphatase Domain, Eep Domain, 5'-Dna End Recognition, Eep, Endonuclease/Exonuclease/Phosphatase Domain, 5'-End Recognition, Nuclear, Hydrolase, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Schellenberg, C. D. Appel, S. Adhikari, P. D. Robertson, D. A. Ramsden, R. S. Williams
Mechanism Of Repair Of 5'-Topoisomerase Ii-Dna Adducts By Mammalian Tyrosyl-Dna Phosphodiesterase 2.
Nat. Struct. Mol. Biol. V. 19 1363 2012
[
close entry info
]
Hetero Components
(3, 22)
Info
All Hetero Components
1a: 6-AMINOHEXAN-1-OL (6AHa)
1b: 6-AMINOHEXAN-1-OL (6AHb)
1c: 6-AMINOHEXAN-1-OL (6AHc)
1d: 6-AMINOHEXAN-1-OL (6AHd)
1e: 6-AMINOHEXAN-1-OL (6AHe)
1f: 6-AMINOHEXAN-1-OL (6AHf)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
2k: ACETATE ION (ACTk)
2l: ACETATE ION (ACTl)
2m: ACETATE ION (ACTm)
2n: ACETATE ION (ACTn)
2o: ACETATE ION (ACTo)
2p: ACETATE ION (ACTp)
2q: ACETATE ION (ACTq)
2r: ACETATE ION (ACTr)
2s: ACETATE ION (ACTs)
2t: ACETATE ION (ACTt)
2u: ACETATE ION (ACTu)
2v: ACETATE ION (ACTv)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3af: 1,2-ETHANEDIOL (EDOaf)
3ag: 1,2-ETHANEDIOL (EDOag)
3ah: 1,2-ETHANEDIOL (EDOah)
3ai: 1,2-ETHANEDIOL (EDOai)
3aj: 1,2-ETHANEDIOL (EDOaj)
3ak: 1,2-ETHANEDIOL (EDOak)
3al: 1,2-ETHANEDIOL (EDOal)
3am: 1,2-ETHANEDIOL (EDOam)
3an: 1,2-ETHANEDIOL (EDOan)
3ao: 1,2-ETHANEDIOL (EDOao)
3ap: 1,2-ETHANEDIOL (EDOap)
3aq: 1,2-ETHANEDIOL (EDOaq)
3ar: 1,2-ETHANEDIOL (EDOar)
3as: 1,2-ETHANEDIOL (EDOas)
3at: 1,2-ETHANEDIOL (EDOat)
3au: 1,2-ETHANEDIOL (EDOau)
3av: 1,2-ETHANEDIOL (EDOav)
3aw: 1,2-ETHANEDIOL (EDOaw)
3ax: 1,2-ETHANEDIOL (EDOax)
3ay: 1,2-ETHANEDIOL (EDOay)
3az: 1,2-ETHANEDIOL (EDOaz)
3b: 1,2-ETHANEDIOL (EDOb)
3ba: 1,2-ETHANEDIOL (EDOba)
3bb: 1,2-ETHANEDIOL (EDObb)
3bc: 1,2-ETHANEDIOL (EDObc)
3bd: 1,2-ETHANEDIOL (EDObd)
3be: 1,2-ETHANEDIOL (EDObe)
3bf: 1,2-ETHANEDIOL (EDObf)
3bg: 1,2-ETHANEDIOL (EDObg)
3bh: 1,2-ETHANEDIOL (EDObh)
3bi: 1,2-ETHANEDIOL (EDObi)
3bj: 1,2-ETHANEDIOL (EDObj)
3bk: 1,2-ETHANEDIOL (EDObk)
3bl: 1,2-ETHANEDIOL (EDObl)
3bm: 1,2-ETHANEDIOL (EDObm)
3bn: 1,2-ETHANEDIOL (EDObn)
3bo: 1,2-ETHANEDIOL (EDObo)
3bp: 1,2-ETHANEDIOL (EDObp)
3bq: 1,2-ETHANEDIOL (EDObq)
3br: 1,2-ETHANEDIOL (EDObr)
3bs: 1,2-ETHANEDIOL (EDObs)
3bt: 1,2-ETHANEDIOL (EDObt)
3bu: 1,2-ETHANEDIOL (EDObu)
3bv: 1,2-ETHANEDIOL (EDObv)
3bw: 1,2-ETHANEDIOL (EDObw)
3bx: 1,2-ETHANEDIOL (EDObx)
3by: 1,2-ETHANEDIOL (EDOby)
3bz: 1,2-ETHANEDIOL (EDObz)
3c: 1,2-ETHANEDIOL (EDOc)
3ca: 1,2-ETHANEDIOL (EDOca)
3cb: 1,2-ETHANEDIOL (EDOcb)
3cc: 1,2-ETHANEDIOL (EDOcc)
3cd: 1,2-ETHANEDIOL (EDOcd)
3ce: 1,2-ETHANEDIOL (EDOce)
3cf: 1,2-ETHANEDIOL (EDOcf)
3cg: 1,2-ETHANEDIOL (EDOcg)
3ch: 1,2-ETHANEDIOL (EDOch)
3ci: 1,2-ETHANEDIOL (EDOci)
3cj: 1,2-ETHANEDIOL (EDOcj)
3ck: 1,2-ETHANEDIOL (EDOck)
3cl: 1,2-ETHANEDIOL (EDOcl)
3cm: 1,2-ETHANEDIOL (EDOcm)
3cn: 1,2-ETHANEDIOL (EDOcn)
3co: 1,2-ETHANEDIOL (EDOco)
3cp: 1,2-ETHANEDIOL (EDOcp)
3cq: 1,2-ETHANEDIOL (EDOcq)
3cr: 1,2-ETHANEDIOL (EDOcr)
3cs: 1,2-ETHANEDIOL (EDOcs)
3ct: 1,2-ETHANEDIOL (EDOct)
3cu: 1,2-ETHANEDIOL (EDOcu)
3cv: 1,2-ETHANEDIOL (EDOcv)
3cw: 1,2-ETHANEDIOL (EDOcw)
3cx: 1,2-ETHANEDIOL (EDOcx)
3cy: 1,2-ETHANEDIOL (EDOcy)
3cz: 1,2-ETHANEDIOL (EDOcz)
3d: 1,2-ETHANEDIOL (EDOd)
3da: 1,2-ETHANEDIOL (EDOda)
3db: 1,2-ETHANEDIOL (EDOdb)
3dc: 1,2-ETHANEDIOL (EDOdc)
3dd: 1,2-ETHANEDIOL (EDOdd)
3de: 1,2-ETHANEDIOL (EDOde)
3df: 1,2-ETHANEDIOL (EDOdf)
3dg: 1,2-ETHANEDIOL (EDOdg)
3dh: 1,2-ETHANEDIOL (EDOdh)
3di: 1,2-ETHANEDIOL (EDOdi)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6AH
1
Ligand/Ion
6-AMINOHEXAN-1-OL
2
ACT
4
Ligand/Ion
ACETATE ION
3
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: DC2 (SOFTWARE)
04: DC3 (SOFTWARE)
05: DC4 (SOFTWARE)
06: DC5 (SOFTWARE)
07: DC6 (SOFTWARE)
08: EC3 (SOFTWARE)
09: FC6 (SOFTWARE)
10: GC2 (SOFTWARE)
11: HC8 (SOFTWARE)
12: NC1 (SOFTWARE)
13: NC2 (SOFTWARE)
14: NC3 (SOFTWARE)
15: NC4 (SOFTWARE)
16: NC5 (SOFTWARE)
17: NC6 (SOFTWARE)
18: NC7 (SOFTWARE)
19: NC8 (SOFTWARE)
20: NC9 (SOFTWARE)
21: OC1 (SOFTWARE)
22: OC2 (SOFTWARE)
23: OC3 (SOFTWARE)
24: OC4 (SOFTWARE)
25: OC5 (SOFTWARE)
26: OC6 (SOFTWARE)
27: OC7 (SOFTWARE)
28: OC8 (SOFTWARE)
29: OC9 (SOFTWARE)
30: PC1 (SOFTWARE)
31: PC2 (SOFTWARE)
32: PC3 (SOFTWARE)
33: PC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
ILE I:206
BINDING SITE FOR RESIDUE EDO A 419
02
CC2
SOFTWARE
GLY A:183 , ASN A:184 , GLN I:204
BINDING SITE FOR RESIDUE EDO A 421
03
DC2
SOFTWARE
CYS B:149 , TYR B:153 , LEU B:344 , VAL B:345 , GLY B:346 , LEU B:347 , EDO I:414 , ACT I:419
BINDING SITE FOR RESIDUE EDO B 403
04
DC3
SOFTWARE
SER B:341 , EDO B:406 , SER I:148
BINDING SITE FOR RESIDUE EDO B 404
05
DC4
SOFTWARE
SER B:125 , TYR B:153 , EDO B:406 , HOH B:573 , LEU I:152
BINDING SITE FOR RESIDUE EDO B 405
06
DC5
SOFTWARE
THR B:123 , EDO B:404 , EDO B:405 , HOH B:619 , ALA I:151
BINDING SITE FOR RESIDUE EDO B 406
07
DC6
SOFTWARE
ARG B:144 , GLU B:348 , HIS I:302 , ASP I:343
BINDING SITE FOR RESIDUE EDO B 408
08
EC3
SOFTWARE
HIS B:302 , SER B:341 , LEU B:342 , HOH I:578
BINDING SITE FOR RESIDUE EDO B 414
09
FC6
SOFTWARE
GLU B:162 , SER B:239 , DC C:2 , DG C:4 , HOH C:204 , DT J:8
BINDING SITE FOR RESIDUE 6AH C 101
10
GC2
SOFTWARE
ASN E:289 , PHE E:291 , PHE E:330 , ARG E:331 , ALA E:332 , GLU E:333 , HOH E:504 , HOH E:577 , EDO I:405
BINDING SITE FOR RESIDUE EDO E 401
11
HC8
SOFTWARE
CYS E:283 , GLY E:285 , PRO E:287 , HOH E:522 , ARG I:144
BINDING SITE FOR RESIDUE EDO E 416
12
NC1
SOFTWARE
ALA I:311 , ASN I:313 , LYS I:349 , EDO I:403
BINDING SITE FOR RESIDUE EDO I 401
13
NC2
SOFTWARE
THR I:179 , LEU I:194 , LYS I:196 , VAL I:199 , PHE I:201
BINDING SITE FOR RESIDUE EDO I 402
14
NC3
SOFTWARE
ALA I:311 , LEU I:347 , PHE I:355 , EDO I:401 , EDO I:409 , EDO I:410
BINDING SITE FOR RESIDUE EDO I 403
15
NC4
SOFTWARE
GLN I:304 , TYR I:305 , ASP I:308 , ALA I:311 , TRP I:360 , EDO I:410
BINDING SITE FOR RESIDUE EDO I 404
16
NC5
SOFTWARE
PHE E:291 , GLU E:334 , EDO E:401 , ALA I:169 , ACT I:420 , HOH I:503
BINDING SITE FOR RESIDUE EDO I 405
17
NC6
SOFTWARE
SER B:148 , SER I:341 , HOH I:550
BINDING SITE FOR RESIDUE EDO I 406
18
NC7
SOFTWARE
GLU A:185 , GLU A:186 , CYS I:168 , ILE I:180
BINDING SITE FOR RESIDUE EDO I 407
19
NC8
SOFTWARE
TYR B:153 , ASP B:343 , SER I:148 , CYS I:149 , LEU I:152 , GLU I:348 , ACT I:418 , ACT I:419 , HOH I:542
BINDING SITE FOR RESIDUE EDO I 408
20
NC9
SOFTWARE
LEU B:347 , HOH B:542 , LYS I:349 , EDO I:403 , HOH I:512
BINDING SITE FOR RESIDUE EDO I 409
21
OC1
SOFTWARE
GLU B:348 , LYS B:349 , ALA I:311 , EDO I:403 , EDO I:404 , HOH I:517
BINDING SITE FOR RESIDUE EDO I 410
22
OC2
SOFTWARE
ASP I:277 , VAL I:280 , GLU I:295 , ARG I:324 , ARG I:327 , HOH I:568 , HOH I:611
BINDING SITE FOR RESIDUE EDO I 411
23
OC3
SOFTWARE
CYS E:283 , GLU I:141 , ARG I:144 , ASP I:351
BINDING SITE FOR RESIDUE EDO I 412
24
OC4
SOFTWARE
CYS A:168 , LYS A:172 , THR A:182 , ASN A:184 , GLU A:185 , PHE A:189 , GLU I:185
BINDING SITE FOR RESIDUE EDO I 413
25
OC5
SOFTWARE
CYS B:149 , LEU B:152 , GLU B:348 , EDO B:403 , HOH B:567 , TYR I:153 , ASP I:343
BINDING SITE FOR RESIDUE EDO I 414
26
OC6
SOFTWARE
LYS I:172 , HOH I:624
BINDING SITE FOR RESIDUE EDO I 415
27
OC7
SOFTWARE
ASP I:277 , GLN I:304 , ARG I:324
BINDING SITE FOR RESIDUE EDO I 416
28
OC8
SOFTWARE
PHE I:209 , PRO I:210 , ASN I:211 , GLU I:246 , ARG I:249 , THR I:253
BINDING SITE FOR RESIDUE ACT I 417
29
OC9
SOFTWARE
HIS B:302 , ASP B:343 , GLY I:145 , EDO I:408 , HOH I:542
BINDING SITE FOR RESIDUE ACT I 418
30
PC1
SOFTWARE
EDO B:403 , CYS I:149 , TYR I:153 , GLY I:346 , LEU I:347 , GLU I:348 , EDO I:408
BINDING SITE FOR RESIDUE ACT I 419
31
PC2
SOFTWARE
PRO I:165 , LYS I:172 , EDO I:405
BINDING SITE FOR RESIDUE ACT I 420
32
PC3
SOFTWARE
GLU I:162 , SER I:239 , DC J:2 , DG J:4 , HOH J:206
BINDING SITE FOR RESIDUE 6AH J 101
33
PC4
SOFTWARE
LEU I:134 , DC J:2
BINDING SITE FOR RESIDUE EDO J 102
[
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]
SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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