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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 S39D MUTANT
 
Authors :  S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Date :  20 Aug 12  (Deposition) - 28 Nov 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (2x),B (2x)
Keywords :  Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
PubMed-ID: 23184945  |  Reference-DOI: 10.1074/JBC.M112.427971

(-) Compounds

Molecule 1 - FASCIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T-FASCIN1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FAN1, FSCN1, HSN, SNL
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 55 KDA ACTIN-BUNDLING PROTEIN, SINGED-LIKE PROTEIN, P55

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (2x): A (2x)B (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 30)

Asymmetric Unit (4, 30)
No.NameCountTypeFull Name
1BR6Ligand/IonBROMIDE ION
2CL13Ligand/IonCHLORIDE ION
3DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4GOL10Ligand/IonGLYCEROL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4GOL3Ligand/IonGLYCEROL
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3DTT-1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4GOL7Ligand/IonGLYCEROL
Biological Unit 3 (1, 14)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3DTT-1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4GOL14Ligand/IonGLYCEROL

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:370BINDING SITE FOR RESIDUE BR A 501
02AC2SOFTWAREARG A:82 , GLY A:86 , ASP A:88BINDING SITE FOR RESIDUE BR A 502
03AC3SOFTWAREARG A:118BINDING SITE FOR RESIDUE CL A 503
04AC4SOFTWAREARG A:82 , GLU A:83BINDING SITE FOR RESIDUE CL A 504
05AC5SOFTWARELYS B:32BINDING SITE FOR RESIDUE CL A 505
06AC6SOFTWAREARG A:167 , ASP A:168 , VAL A:169BINDING SITE FOR RESIDUE CL A 506
07AC7SOFTWAREPRO A:52 , ARG A:90 , HOH A:628 , HOH A:633BINDING SITE FOR RESIDUE CL A 507
08AC8SOFTWARETRP A:340 , ASP A:342 , ILE A:345 , GLY A:421 , TYR A:423 , PHE A:452 , PHE A:453 , HOH A:641 , HOH A:677BINDING SITE FOR RESIDUE GOL A 508
09AC9SOFTWARELYS A:379 , LEU A:380 , ILE A:381 , ASN A:382 , ARG A:383 , PRO A:384 , LEU A:416 , PHE A:418BINDING SITE FOR RESIDUE GOL A 509
10BC1SOFTWARETYR A:145 , VAL A:147 , LYS A:150 , LYS A:220BINDING SITE FOR RESIDUE GOL A 510
11BC2SOFTWARESER A:57 , ALA A:58 , ARG A:217 , SER A:218 , GLY A:219 , LYS A:220 , LEU A:253 , HOH A:742 , HOH A:775BINDING SITE FOR RESIDUE DTT A 511
12BC3SOFTWAREARG B:82 , GLY B:86 , ASP B:88BINDING SITE FOR RESIDUE BR B 501
13BC4SOFTWAREARG B:90BINDING SITE FOR RESIDUE BR B 502
14BC5SOFTWAREGLU B:83BINDING SITE FOR RESIDUE BR B 503
15BC6SOFTWAREARG B:217 , SER B:218BINDING SITE FOR RESIDUE BR B 504
16BC7SOFTWARETHR A:320 , ASP B:420BINDING SITE FOR RESIDUE CL B 505
17BC8SOFTWAREPRO B:128 , LYS B:131BINDING SITE FOR RESIDUE CL B 506
18BC9SOFTWAREARG B:167 , ASP B:168BINDING SITE FOR RESIDUE CL B 507
19CC1SOFTWAREGLN A:324 , PHE B:418BINDING SITE FOR RESIDUE CL B 508
20CC2SOFTWAREGLN B:182 , ARG B:185 , HOH B:648BINDING SITE FOR RESIDUE CL B 509
21CC3SOFTWARETYR B:230 , GLY B:243 , LYS B:244BINDING SITE FOR RESIDUE CL B 510
22CC4SOFTWARETHR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124BINDING SITE FOR RESIDUE CL B 511
23CC5SOFTWARETHR B:115 , GLU B:116BINDING SITE FOR RESIDUE CL B 512
24CC6SOFTWARETRP B:340 , ASP B:342 , ILE B:345 , GLY B:421 , TYR B:423 , PHE B:452 , PHE B:453 , HOH B:863BINDING SITE FOR RESIDUE GOL B 513
25CC7SOFTWARELEU B:380 , ILE B:381 , ASN B:382 , ARG B:383 , PRO B:384 , LEU B:416 , PHE B:418 , HOH B:621BINDING SITE FOR RESIDUE GOL B 514
26CC8SOFTWARETHR A:326 , ALA A:327 , SER A:329 , HOH A:638 , GLN B:415 , LYS B:426 , SER B:428 , GLY B:430BINDING SITE FOR RESIDUE GOL B 515
27CC9SOFTWARELYS A:43 , HIS A:65 , HOH A:869 , ASN B:21BINDING SITE FOR RESIDUE GOL B 516
28DC1SOFTWAREGLU B:8 , ALA B:9 , GLN B:11 , GLN B:258 , GLU B:492 , HOH B:789BINDING SITE FOR RESIDUE GOL B 517
29DC2SOFTWAREPRO A:487 , ARG B:398 , LYS B:399 , VAL B:400 , ARG B:408BINDING SITE FOR RESIDUE GOL B 518
30DC3SOFTWAREARG B:344 , ASP B:420BINDING SITE FOR RESIDUE GOL B 519

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GOV)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp A:457 -Tyr A:458
2Arg B:158 -Pro B:159
3Ala B:160 -Asp B:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GOV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GOV)

(-) Exons   (0, 0)

(no "Exon" information available for 4GOV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gova1 A:6-140 Fascin                                                                                                               d4gova2 A:141-259 Fascin                                                                                         d4gova3 A:260-382 Fascin                                                                                           d4gova4 A:383-493 Fascin                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.....eeee......eeeee...hhhhheeee.........eee......eee.....eee.....hhhh.eeeee....eeeeee.....eee......eeee...hhhhheeeee....eeeeee....eeeee.....eeeee....hhhhheeeeee..eeeee.....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee..hhhh.eeeee...eeeee.....eee....eeee...hhhhheeeee...eeee.....eeee.....eeeee.......eeee....eeee.....eeee.....eeeee...hhhhh.eeee....ee.......eeee....eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeee...eeeeee..eeeee.....eeeee...hhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gov A   6 TAEAVQIQFGLINCGNKYLTAEAFGFKVNASASDLKKKQIWTLEQPPAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGVGKDELFALEQSCAQVVLQAANERNVSTMDLSANQDEETDQETFQLEIDRKCAFRTHTGKYWTLTATGGVQSTASSKSCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    15        25        35        45      ||57        67        77        87        97       107       117       127       137       147       159       169       179       189       199       209       219       229       239   ||  253       263       273 ||    286       296   ||  309       319       329||     341       351       361       371       381       391      |403       413       423       433       443       453       463       473       483       493
                                                                         52|                                                                                                  156|                                                                                 243|                        275|                  300|                       330|                                                              398|                                                                                            
                                                                          55                                                                                                   159                                                                                  248                         279                   304                        333                                                               401                                                                                            


Chain B from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4govb1 B:7-140 Fascin                                                                                                            d4govb2 B:141-259 Fascin                                                                                               d4govb3 B:260-382 Fascin                                                                                                   d4govb4 B:383-493 Fascin                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.....eeee......eeeee...hhhhheeee.......eee.....eeee.....eeeee...hhhh.eeeee.....eeeee.....eee......eeee...hhhhh.eeee....eeeeee....eeeee.......eeeee....hhhh.eeeeee..eeeeee....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee...........eeee....eeeee.....eee.......eeee...hhhhheeeee......eeee.......ee.....ee......hhhhh.eeee....eeee.....eeee.....eeeee...hhhhh.eeee....ee.......eeee......eeeee.....eeeeee..eeeee.....eeee.....eeeee......eee.....eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gov B   7 AEAVQIQFGLINCGNKYLTAEAFGFKVNASASDLKKKQIWTLEQPPDAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    16        26        36        46      ||60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490   
                                                                         53|                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                          58
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: beta-Trefoil (385)
(-)
Superfamily: Actin-crosslinking proteins (8)
(-)
Family: Fascin (6)
(-)
Protein domain: Fascin (6)
(-)
Human (Homo sapiens) [TaxId: 9606] (6)
1ad4gova1A:6-140
1bd4gova3A:260-382
1cd4gova4A:383-493
1dd4govb1B:7-140
1ed4govb2B:141-259
1fd4govb3B:260-382
1gd4govb4B:383-493
1hd4gova2A:141-259

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GOV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GOV)

(-) Gene Ontology  (39, 39)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        FSCN1_HUMAN | Q16658: 1dfc 3llp 3p53 4goy 4gp0 4gp3

(-) Related Entries Specified in the PDB File

4goy 4gp0 4gp3