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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 R149A K150A R151A MUTANT
 
Authors :  S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Date :  20 Aug 12  (Deposition) - 28 Nov 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
PubMed-ID: 23184945  |  Reference-DOI: 10.1074/JBC.M112.427971

(-) Compounds

Molecule 1 - FASCIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T-FASCIN1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FAN1, FSCN1, HSN, SNL
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 55 KDA ACTIN-BUNDLING PROTEIN, SINGED-LIKE PROTEIN, P55

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 50)

Asymmetric Unit (5, 50)
No.NameCountTypeFull Name
1BR7Ligand/IonBROMIDE ION
2CL29Ligand/IonCHLORIDE ION
3DTT3Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5GOL10Ligand/IonGLYCEROL
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4EPE-1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5GOL4Ligand/IonGLYCEROL
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3DTT2Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5GOL6Ligand/IonGLYCEROL
Biological Unit 3 (3, 28)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3DTT6Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
4EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5GOL20Ligand/IonGLYCEROL

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:86 , PRO A:87 , ASP A:88BINDING SITE FOR RESIDUE BR A 501
02AC2SOFTWARETHR A:484 , VAL A:485 , ARG B:398BINDING SITE FOR RESIDUE CL A 502
03AC3SOFTWARECYS A:456 , ASP A:457 , VAL B:400 , THR B:401BINDING SITE FOR RESIDUE CL A 503
04AC4SOFTWAREGLU A:417 , PHE A:418 , GOL A:514BINDING SITE FOR RESIDUE CL A 504
05AC5SOFTWARESER A:329 , LYS A:330BINDING SITE FOR RESIDUE CL A 505
06AC6SOFTWAREGLN A:182 , ASP A:183 , ARG A:185BINDING SITE FOR RESIDUE CL A 506
07AC7SOFTWAREPHE A:418 , ASP A:420BINDING SITE FOR RESIDUE CL A 507
08AC8SOFTWAREHOH A:608 , GLN B:124 , THR B:125BINDING SITE FOR RESIDUE CL A 508
09AC9SOFTWAREASP A:446BINDING SITE FOR RESIDUE CL A 509
10BC1SOFTWAREHIS A:198 , ARG A:229BINDING SITE FOR RESIDUE CL A 510
11BC2SOFTWARELYS A:131 , ARG B:68BINDING SITE FOR RESIDUE CL A 511
12BC3SOFTWARELYS A:43 , GLN A:44BINDING SITE FOR RESIDUE CL A 512
13BC4SOFTWAREASP A:342 , ARG A:343 , ARG A:344 , ILE A:345 , GLY A:421 , TYR A:423 , PHE A:452 , PHE A:453BINDING SITE FOR RESIDUE GOL A 513
14BC5SOFTWARELEU A:380 , ILE A:381 , ASN A:382 , ARG A:383 , PRO A:384 , LEU A:416 , PHE A:418 , CL A:504BINDING SITE FOR RESIDUE GOL A 514
15BC6SOFTWARECYS A:260 , ALA A:261 , LEU A:296 , ILE A:298 , CYS A:456 , ASN A:459 , LYS A:460 , TYR A:493BINDING SITE FOR RESIDUE GOL A 515
16BC7SOFTWAREALA A:149 , VAL A:165 , ASP A:166 , PRO A:236BINDING SITE FOR RESIDUE GOL A 516
17BC8SOFTWAREARG A:341 , ASP A:342 , ARG A:343 , ARG A:344 , LEU A:375 , HOH B:693 , HOH B:694BINDING SITE FOR RESIDUE DTT A 517
18BC9SOFTWAREARG B:167 , ASP B:168BINDING SITE FOR RESIDUE BR B 501
19CC1SOFTWAREARG B:82 , GLY B:86 , PRO B:87 , ASP B:88BINDING SITE FOR RESIDUE BR B 502
20CC2SOFTWAREGLN B:182 , ARG B:185BINDING SITE FOR RESIDUE BR B 503
21CC3SOFTWAREARG A:167 , ASP A:168 , ARG B:201BINDING SITE FOR RESIDUE BR B 504
22CC4SOFTWARETYR B:230 , LYS B:244BINDING SITE FOR RESIDUE BR B 505
23CC5SOFTWAREARG B:90BINDING SITE FOR RESIDUE BR B 506
24CC6SOFTWARETHR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124BINDING SITE FOR RESIDUE CL B 507
25CC7SOFTWAREGLU B:83BINDING SITE FOR RESIDUE CL B 508
26CC8SOFTWARETHR A:320 , PHE B:418 , ASP B:420BINDING SITE FOR RESIDUE CL B 509
27CC9SOFTWAREGLY B:56 , ARG B:217 , SER B:218BINDING SITE FOR RESIDUE CL B 510
28DC1SOFTWAREASP B:199 , ARG B:229BINDING SITE FOR RESIDUE CL B 511
29DC2SOFTWAREARG A:205BINDING SITE FOR RESIDUE CL B 512
30DC3SOFTWAREGLN B:104BINDING SITE FOR RESIDUE CL B 513
31DC4SOFTWARESER B:409 , HOH B:622BINDING SITE FOR RESIDUE CL B 514
32DC5SOFTWARESER B:409 , SER B:410 , HOH B:622BINDING SITE FOR RESIDUE CL B 515
33DC6SOFTWAREALA B:107 , THR B:246 , LYS B:247 , VAL B:248BINDING SITE FOR RESIDUE CL B 516
34DC7SOFTWARELYS B:131BINDING SITE FOR RESIDUE CL B 517
35DC8SOFTWAREARG B:185BINDING SITE FOR RESIDUE CL B 518
36DC9SOFTWAREVAL B:126BINDING SITE FOR RESIDUE CL B 519
37EC1SOFTWAREPHE B:418 , GOL B:528BINDING SITE FOR RESIDUE CL B 520
38EC2SOFTWAREARG B:408BINDING SITE FOR RESIDUE CL B 521
39EC3SOFTWAREASP B:446BINDING SITE FOR RESIDUE CL B 522
40EC4SOFTWARELYS B:22 , THR B:115BINDING SITE FOR RESIDUE CL B 523
41EC5SOFTWAREVAL B:400BINDING SITE FOR RESIDUE CL B 524
42EC6SOFTWARETRP B:340 , ASP B:342 , ILE B:345 , GLY B:421 , TYR B:423 , PHE B:452 , PHE B:453 , HOH B:604 , HOH B:631BINDING SITE FOR RESIDUE GOL B 525
43EC7SOFTWAREHIS B:392 , ASN B:407 , ARG B:408 , SER B:409 , HOH B:739BINDING SITE FOR RESIDUE GOL B 526
44EC8SOFTWARESER B:133 , VAL B:134 , GLN B:182 , ARG B:185 , HOH B:695BINDING SITE FOR RESIDUE GOL B 527
45EC9SOFTWARELEU B:380 , ILE B:381 , ASN B:382 , ARG B:383 , PRO B:384 , LEU B:416 , PHE B:418 , CL B:520 , GOL B:529BINDING SITE FOR RESIDUE GOL B 528
46FC1SOFTWARETHR A:326 , HIS B:193 , PRO B:384 , GLN B:415 , LEU B:416 , GLU B:417 , GOL B:528BINDING SITE FOR RESIDUE GOL B 529
47FC2SOFTWAREARG B:344 , ASP B:420BINDING SITE FOR RESIDUE GOL B 530
48FC3SOFTWARELYS B:41 , LYS B:42 , LYS B:43BINDING SITE FOR RESIDUE DTT B 531
49FC4SOFTWAREGLY B:113 , GLU B:130 , HOH B:633BINDING SITE FOR RESIDUE DTT B 532
50FC5SOFTWAREGLU A:207 , ASP B:166 , THR B:289 , ASP B:290BINDING SITE FOR RESIDUE EPE B 533

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GP0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:217 -Ser A:218
2Arg B:158 -Pro B:159

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GP0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GP0)

(-) Exons   (0, 0)

(no "Exon" information available for 4GP0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:477
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4gp0a1 A:7-140 Fascin                                                                                                              d4gp0a2 A:141-259 Fascin                                                                                           d4gp0a3 A:260-382 Fascin                                                                                               d4gp0a4 A:383-493 Fascin                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.....eeee......eeeee...hhhhheeee.........eee.....eeee.....eeeee...hhhh.eeeee.....eeeee.....eeeee..eeeeee...hhhhh.eeee....eeeeee....eeeeee....eeeeee....hhhh.eeeee....eeeee....ee.....ee...hhhh.eeeee....eeeee.....eeee....eeee...hhhh.eeee....eeeee.....eee...eeee...hhhhheeeee......eeee.....eeee.....eeeee...hhhhh.eeeee..eeeee.....eeee.....eeeee...hhhhh.eeee....ee..ee..eeeee......eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeee...eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gp0 A   7 AEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTAAAYAHLSAPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKVGKDELFALEQSCAQVVLQAANERNVSTDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    16        26        36        46     || 58        68        78        88        98       108       118       128       138       148       159       169       179       189       199       209       219       229       239    || 252       262       272  ||   286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       
                                                                        52|                                                                                                   157|                                                                                  244|                        275|                                                                                                                                                                                                                     
                                                                         55                                                                                                    159                                                                                   248                         280                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4gp0b1 B:8-140 Fascin                                                                                                              d4gp0b2 B:141-259 Fascin                                                                                               d4gp0b3 B:260-382 Fascin                                                                                                 d4gp0b4 B:383-493 Fascin                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeee.hhhh.eeeee...hhhhheeee..........eee.....eeee.....eeeee...hhhh.eeeee.....eeeee.....eee......eeee...hhhhh.eeee....eeeeee....eeeee.......eeeee....hhhhheeeee....eeee.....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee...........eeeee...eeeee.....eee.......eeee...hhhhheeeee....eeee.......ee.....ee......hhhhh.eeeee..eeeee.....eeee.....eeeee...hhhhh.eeee....ee..ee..eeeee......eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeee...eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gp0 B   8 EAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTAAAYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    17        27        37        47     || 58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298||     310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490   
                                                                        53|                                                                                                                                                                                                                                                 299|                                                                                                                                                                                               
                                                                         55                                                                                                                                                                                                                                                  302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: beta-Trefoil (385)
(-)
Superfamily: Actin-crosslinking proteins (8)
(-)
Family: Fascin (6)
(-)
Protein domain: Fascin (6)
(-)
Human (Homo sapiens) [TaxId: 9606] (6)
1ad4gp0a1A:7-140
1bd4gp0a2A:141-259
1cd4gp0a3A:260-382
1dd4gp0a4A:383-493
1ed4gp0b1B:8-140
1fd4gp0b2B:141-259
1gd4gp0b3B:260-382
1hd4gp0b4B:383-493

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GP0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GP0)

(-) Gene Ontology  (39, 39)

Asymmetric Unit(hide GO term definitions)

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  FSCN1_HUMAN | Q16658
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FSCN1_HUMAN | Q16658: 1dfc 3llp 3p53 4gov 4goy 4gp3

(-) Related Entries Specified in the PDB File

4gov 4goy 4gp3