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4GOV
Biol. Unit 2
Info
Asym.Unit (332 KB)
Biol.Unit 1 (163 KB)
Biol.Unit 2 (167 KB)
Biol.Unit 3 (646 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 S39D MUTANT
Authors
:
S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Date
:
20 Aug 12 (Deposition) - 28 Nov 12 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
3a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
DTT
-1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
4
GOL
7
Ligand/Ion
GLYCEROL
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Sites
(20, 20)
Info
All Sites
01: AC5 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
20: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
LYS B:32
BINDING SITE FOR RESIDUE CL A 505
02
BC3
SOFTWARE
ARG B:82 , GLY B:86 , ASP B:88
BINDING SITE FOR RESIDUE BR B 501
03
BC4
SOFTWARE
ARG B:90
BINDING SITE FOR RESIDUE BR B 502
04
BC5
SOFTWARE
GLU B:83
BINDING SITE FOR RESIDUE BR B 503
05
BC6
SOFTWARE
ARG B:217 , SER B:218
BINDING SITE FOR RESIDUE BR B 504
06
BC7
SOFTWARE
THR A:320 , ASP B:420
BINDING SITE FOR RESIDUE CL B 505
07
BC8
SOFTWARE
PRO B:128 , LYS B:131
BINDING SITE FOR RESIDUE CL B 506
08
BC9
SOFTWARE
ARG B:167 , ASP B:168
BINDING SITE FOR RESIDUE CL B 507
09
CC1
SOFTWARE
GLN A:324 , PHE B:418
BINDING SITE FOR RESIDUE CL B 508
10
CC2
SOFTWARE
GLN B:182 , ARG B:185 , HOH B:648
BINDING SITE FOR RESIDUE CL B 509
11
CC3
SOFTWARE
TYR B:230 , GLY B:243 , LYS B:244
BINDING SITE FOR RESIDUE CL B 510
12
CC4
SOFTWARE
THR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124
BINDING SITE FOR RESIDUE CL B 511
13
CC5
SOFTWARE
THR B:115 , GLU B:116
BINDING SITE FOR RESIDUE CL B 512
14
CC6
SOFTWARE
TRP B:340 , ASP B:342 , ILE B:345 , GLY B:421 , TYR B:423 , PHE B:452 , PHE B:453 , HOH B:863
BINDING SITE FOR RESIDUE GOL B 513
15
CC7
SOFTWARE
LEU B:380 , ILE B:381 , ASN B:382 , ARG B:383 , PRO B:384 , LEU B:416 , PHE B:418 , HOH B:621
BINDING SITE FOR RESIDUE GOL B 514
16
CC8
SOFTWARE
THR A:326 , ALA A:327 , SER A:329 , HOH A:638 , GLN B:415 , LYS B:426 , SER B:428 , GLY B:430
BINDING SITE FOR RESIDUE GOL B 515
17
CC9
SOFTWARE
LYS A:43 , HIS A:65 , HOH A:869 , ASN B:21
BINDING SITE FOR RESIDUE GOL B 516
18
DC1
SOFTWARE
GLU B:8 , ALA B:9 , GLN B:11 , GLN B:258 , GLU B:492 , HOH B:789
BINDING SITE FOR RESIDUE GOL B 517
19
DC2
SOFTWARE
PRO A:487 , ARG B:398 , LYS B:399 , VAL B:400 , ARG B:408
BINDING SITE FOR RESIDUE GOL B 518
20
DC3
SOFTWARE
ARG B:344 , ASP B:420
BINDING SITE FOR RESIDUE GOL B 519
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4gova1 (A:6-140)
1b: SCOP_d4gova3 (A:260-382)
1c: SCOP_d4gova4 (A:383-493)
1d: SCOP_d4govb1 (B:7-140)
1e: SCOP_d4govb2 (B:141-259)
1f: SCOP_d4govb3 (B:260-382)
1g: SCOP_d4govb4 (B:383-493)
1h: SCOP_d4gova2 (A:141-259)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Actin-crosslinking proteins
(8)
Family
:
Fascin
(6)
Protein domain
:
Fascin
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4gova1
A:6-140
1b
d4gova3
A:260-382
1c
d4gova4
A:383-493
1d
d4govb1
B:7-140
1e
d4govb2
B:141-259
1f
d4govb3
B:260-382
1g
d4govb4
B:383-493
1h
d4gova2
A:141-259
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (332 KB)
Header - Asym.Unit
Biol.Unit 1 (163 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
Biol.Unit 3 (646 KB)
Header - Biol.Unit 3
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