4GOY - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 K41A MUTANT

Authors :   S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang

Date :   20 Aug 12 (Deposition) - 28 Nov 12 (Release) - 30 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)
Biol. Unit 4: B  (2x)

Keywords :   Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
PubMed-ID: 23184945 | Reference-DOI: 10.1074/JBC.M112.427971

Molecule 1 - FASCIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX4T-FASCIN1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	FAN1, FSCN1, HSN, SNL
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	55 KDA ACTIN-BUNDLING PROTEIN, SINGED-LIKE PROTEIN, P55

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B
Biological Unit 4 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 25)

No.	Name	Count	Type	Full Name
1	BR	8	Ligand/Ion	BROMIDE ION
2	CL	10	Ligand/Ion	CHLORIDE ION
3	DTT	1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
4	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	BR	-1	Ligand/Ion	BROMIDE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DTT	-1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
4	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	BR	-1	Ligand/Ion	BROMIDE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DTT	1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
4	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 3 (2, 7)

No.	Name	Count	Type	Full Name
1	BR	-1	Ligand/Ion	BROMIDE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DTT	1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
4	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 4 (2, 8)

No.	Name	Count	Type	Full Name
1	BR	-1	Ligand/Ion	BROMIDE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DTT	2	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
4	GOL	6	Ligand/Ion	GLYCEROL

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:82 , GLY A:86 , ASP A:88	BINDING SITE FOR RESIDUE BR A 501
02	AC2	SOFTWARE	ARG A:167 , ASP A:168 , VAL A:169	BINDING SITE FOR RESIDUE BR A 502
03	AC3	SOFTWARE	ALA A:370	BINDING SITE FOR RESIDUE BR A 503
04	AC4	SOFTWARE	ASP B:420 , HOH B:601	BINDING SITE FOR RESIDUE CL A 504
05	AC5	SOFTWARE	PRO A:128	BINDING SITE FOR RESIDUE CL A 505
06	AC6	SOFTWARE	ASP A:420	BINDING SITE FOR RESIDUE CL A 506
07	AC7	SOFTWARE	CYS A:260 , TYR A:458 , ASN A:459	BINDING SITE FOR RESIDUE CL A 507
08	AC8	SOFTWARE	TRP A:340 , ASP A:342 , ARG A:344 , ILE A:345 , MET A:378 , GLY A:421 , TYR A:423 , PHE A:452 , PHE A:453	BINDING SITE FOR RESIDUE GOL A 508
09	AC9	SOFTWARE	LEU A:380 , ILE A:381 , ASN A:382 , ARG A:383 , PRO A:384 , LEU A:416 , PHE A:418 , TYR A:423	BINDING SITE FOR RESIDUE GOL A 509
10	BC1	SOFTWARE	THR A:326 , ALA A:327 , SER A:328 , SER A:329 , ASN A:331 , HOH A:726 , GLN B:415 , LYS B:426 , SER B:428 , GLY B:430	BINDING SITE FOR RESIDUE GOL A 510
11	BC2	SOFTWARE	ARG B:82 , GLY B:86 , ASP B:88	BINDING SITE FOR RESIDUE BR B 501
12	BC3	SOFTWARE	TYR B:230 , LYS B:244	BINDING SITE FOR RESIDUE BR B 502
13	BC4	SOFTWARE	ARG B:167 , ASP B:168	BINDING SITE FOR RESIDUE BR B 503
14	BC5	SOFTWARE	ARG B:82 , GLU B:83	BINDING SITE FOR RESIDUE BR B 504
15	BC6	SOFTWARE	ARG B:90	BINDING SITE FOR RESIDUE BR B 505
16	BC7	SOFTWARE	THR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124	BINDING SITE FOR RESIDUE CL B 506
17	BC8	SOFTWARE	GLN B:182 , ARG B:185	BINDING SITE FOR RESIDUE CL B 507
18	BC9	SOFTWARE	LYS B:399	BINDING SITE FOR RESIDUE CL B 508
19	CC1	SOFTWARE	GLY B:235	BINDING SITE FOR RESIDUE CL B 509
20	CC2	SOFTWARE	PHE A:29 , ARG B:100 , PRO B:128	BINDING SITE FOR RESIDUE CL B 510
21	CC3	SOFTWARE	ARG B:217 , SER B:218 , LYS B:250	BINDING SITE FOR RESIDUE CL B 511
22	CC4	SOFTWARE	LYS B:379 , LEU B:380 , ILE B:381 , ARG B:383 , PRO B:384 , LEU B:416 , PHE B:418 , HOH B:630	BINDING SITE FOR RESIDUE GOL B 512
23	CC5	SOFTWARE	LEU B:40 , ILE B:45 , ALA B:137 , ARG B:389 , HIS B:392 , GLY B:393 , ARG B:408 , SER B:409 , HOH B:679 , HOH B:792	BINDING SITE FOR RESIDUE GOL B 513
24	CC6	SOFTWARE	ASP B:342 , ARG B:344 , ILE B:345 , GLY B:421 , TYR B:423 , PHE B:452 , PHE B:453 , HOH B:627 , HOH B:773	BINDING SITE FOR RESIDUE GOL B 514
25	CC7	SOFTWARE	GLY A:114 , THR A:115 , ARG A:118 , HOH A:804 , PHE B:29 , GLY B:30 , LYS B:32 , ARG B:468	BINDING SITE FOR RESIDUE DTT B 515

(no "SS Bond" information available for 4GOY)

Asymmetric Unit

No.	Residues
1	Ala A:55	-	Gly A:56

(no "SAP(SNP)/Variant" information available for 4GOY)

(no "PROSITE Motif" information available for 4GOY)

(no "Exon" information available for 4GOY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:475
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4goya1 A:7-140 Fascin                                                                                                              d4goya2 A:141-259 Fascin                                                                                             d4goya3 A:260-382 Fascin                                                                                             d4goya4 A:383-493 Fascin                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.....eeee......eeeee...hhhhheeee.........eee.....eeee.....eeeee...hhhh.eeeee....eeeeee.....eee......eeee...hhhhheeeee....eeeeee....eeeeee...eeeeee....hhhhheeeeee..eeeee.....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee......hhhh.eeee....eeeee.....eee....eeee...hhhhheeeee...eeee.....eeee.....eeeee...hhhh.eeeeee..eeeeee....eeee.....eeeee...hhhhh.eeee....ee..ee..eeeee....eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeeee..eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4goy A   7 AEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLAKKQIWTLEQPPAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSAADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTMDLSANQDEETDQETFQLEIDKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    16        26        36        46     || 58        68        78        88        98       108       118       128       138       148       160       170       180       190       200       210       220       230       240       250       260       270    || 283       293     ||306       316       326       336       346       356       366       376       386       396 ||    408       418       428       438       448       458       468       478       488     
                                                                        52|                                                                                                   157|                                                                                                                275|                 299|                                                                                            398|                                                                                            
                                                                         55                                                                                                    160                                                                                                                 279                  303                                                                                             401

Chain B from PDB  Type:PROTEIN  Length:484
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4goyb1 B:8-140 Fascin                                                                                                             d4goyb2 B:141-259 Fascin                                                                                               d4goyb3 B:260-382 Fascin                                                                                                   d4goyb4 B:383-493 Fascin                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeee......eeeee...hhhhheeee.........eee.....eeee.....eeeee...hhhh.eeeee....eeeeee.....eee......eeee...hhhhheeeee....eeeeee....eeeee.......eeeee....hhhh.eeeeee..eeeeee....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee...........eeee....eeeee.....eee.......eeee...hhhhheeeee......eeee.....eeee.....eeeee...hhhhh.eeeee..eeeee.....eeee.....eeeee...hhhhh.eeee....ee..ee..eeeee......eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeee...eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4goy B   8 EAVQIQFGLINCGNKYLTAEAFGFKVNASASSLAKKQIWTLEQPPAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    17        27        37        47    ||  59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489    
                                                                       52|                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                                                                        55

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: beta-Trefoil (385)

Superfamily: Actin-crosslinking proteins (8)

Family: Fascin (6)

Protein domain: Fascin (6)

Human (Homo sapiens) [TaxId: 9606] (6)

1a	d4goya1	A:7-140
1b	d4goya2	A:141-259
1c	d4goya3	A:260-382
1d	d4goya4	A:383-493
1e	d4goyb1	B:8-140
1f	d4goyb2	B:141-259
1g	d4goyb3	B:260-382
1h	d4goyb4	B:383-493

(no "CATH Domain" information available for 4GOY)

(no "Pfam Domain" information available for 4GOY)

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	Cis Peptide Bonds
		Ala A:55 - Gly A:56	[ RasMol ]

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	FSCN1_HUMAN \| Q16658	:	1dfc 3llp 3p53 4gov 4gp0 4gp3

Description

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Ligands, Modified Residues, Ions (4, 25)

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