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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 K358A MUTANT
 
Authors :  S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Date :  20 Aug 12  (Deposition) - 28 Nov 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Biol. Unit 4:  B  (2x)
Keywords :  Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
PubMed-ID: 23184945  |  Reference-DOI: 10.1074/JBC.M112.427971

(-) Compounds

Molecule 1 - FASCIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T-FASCIN1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FAN1, FSCN1, HSN, SNL
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 55 KDA ACTIN-BUNDLING PROTEIN, SINGED-LIKE PROTEIN, P55

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB
Biological Unit 4 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 32)

Asymmetric Unit (3, 32)
No.NameCountTypeFull Name
1BR7Ligand/IonBROMIDE ION
2CL18Ligand/IonCHLORIDE ION
3GOL7Ligand/IonGLYCEROL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL3Ligand/IonGLYCEROL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL
Biological Unit 3 (1, 7)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL7Ligand/IonGLYCEROL
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CL-1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:167 , ASP A:168 , VAL A:169BINDING SITE FOR RESIDUE BR A 501
02AC2SOFTWAREARG A:82 , GLY A:86 , ASP A:88BINDING SITE FOR RESIDUE BR A 502
03AC3SOFTWARETHR A:125 , VAL A:126 , ALA A:370BINDING SITE FOR RESIDUE BR A 503
04AC4SOFTWARETHR A:484 , VAL A:485 , ARG B:398BINDING SITE FOR RESIDUE CL A 504
05AC5SOFTWARESER A:329 , LYS A:330BINDING SITE FOR RESIDUE CL A 505
06AC6SOFTWAREASP A:420BINDING SITE FOR RESIDUE CL A 506
07AC7SOFTWAREPHE A:418BINDING SITE FOR RESIDUE CL A 507
08AC8SOFTWAREGLU A:83BINDING SITE FOR RESIDUE CL A 508
09AC9SOFTWAREASP A:342 , ARG A:343 , ARG A:344 , ILE A:345 , GLY A:421 , TYR A:423 , PHE A:452 , PHE A:453 , HOH A:688 , HOH A:796BINDING SITE FOR RESIDUE GOL A 509
10BC1SOFTWARELEU A:380 , ILE A:381 , ASN A:382 , ARG A:383 , PRO A:384 , LEU A:416 , PHE A:418 , HOH A:704BINDING SITE FOR RESIDUE GOL A 510
11BC2SOFTWAREARG A:217 , SER A:218 , GLY A:219 , LYS A:220 , LYS A:250 , LEU A:253 , HOH A:636 , HOH A:660BINDING SITE FOR RESIDUE GOL A 511
12BC3SOFTWAREARG B:167 , ASP B:168BINDING SITE FOR RESIDUE BR B 501
13BC4SOFTWAREARG B:82 , GLY B:86 , ASP B:88BINDING SITE FOR RESIDUE BR B 502
14BC5SOFTWARETYR B:230 , GLY B:243 , LYS B:244BINDING SITE FOR RESIDUE BR B 503
15BC6SOFTWAREPRO B:87 , ARG B:90BINDING SITE FOR RESIDUE BR B 504
16BC7SOFTWARETHR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124BINDING SITE FOR RESIDUE CL B 505
17BC8SOFTWAREGLN B:182 , ARG B:185BINDING SITE FOR RESIDUE CL B 506
18BC9SOFTWAREARG B:82 , GLU B:83BINDING SITE FOR RESIDUE CL B 507
19CC1SOFTWAREARG B:217 , SER B:218 , LYS B:250BINDING SITE FOR RESIDUE CL B 508
20CC2SOFTWAREASP B:420BINDING SITE FOR RESIDUE CL B 509
21CC3SOFTWAREARG B:398 , LYS B:399BINDING SITE FOR RESIDUE CL B 510
22CC4SOFTWAREARG B:408 , SER B:409 , HOH B:606BINDING SITE FOR RESIDUE CL B 511
23CC5SOFTWAREGLN B:104 , ARG B:109BINDING SITE FOR RESIDUE CL B 512
24CC6SOFTWAREARG B:185BINDING SITE FOR RESIDUE CL B 513
25CC7SOFTWAREASP B:446BINDING SITE FOR RESIDUE CL B 514
26CC8SOFTWARETHR A:115 , ARG A:118 , PHE B:29 , ARG B:468BINDING SITE FOR RESIDUE CL B 515
27CC9SOFTWAREASP B:450BINDING SITE FOR RESIDUE CL B 516
28DC1SOFTWAREPHE B:418BINDING SITE FOR RESIDUE CL B 517
29DC2SOFTWARELYS B:379 , LEU B:380 , ILE B:381 , ASN B:382 , ARG B:383 , PRO B:384 , LEU B:416 , PHE B:418BINDING SITE FOR RESIDUE GOL B 518
30DC3SOFTWARELYS B:32 , VAL B:33 , ASP B:117 , LEU B:119 , HOH B:690 , HOH B:703BINDING SITE FOR RESIDUE GOL B 519
31DC4SOFTWARESER B:133 , VAL B:134 , GLN B:184 , HOH B:728 , HOH B:760BINDING SITE FOR RESIDUE GOL B 520
32DC5SOFTWAREILE B:345 , MET B:378 , GLY B:421 , TYR B:423 , PHE B:452 , PHE B:453BINDING SITE FOR RESIDUE GOL B 521

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GP3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:55 -Gly A:56
2Ala A:358 -Lys A:359

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GP3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GP3)

(-) Exons   (0, 0)

(no "Exon" information available for 4GP3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gp3a1 A:7-140 Fascin                                                                                                              d4gp3a2 A:141-259 Fascin                                                                                             d4gp3a3 A:260-382 Fascin                                                                                                d4gp3a4 A:383-493 Fascin                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.....eeee......eeeee...hhhhheeee.........eee.....eeee.....eeeee...hhhh.eeeee.....eeeee.....eee......eeee...hhhhh.eeee....eeeeee....eeeeee...eeeeee....hhhhheeeeee..eeeee.....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee......hhhh.eeeee...eeeee.....eee....eeee...hhh.eeeeee......eeee.....eeee.....eeeee...hhhh.eeeeee..eeeeee....eeee.....eeeee...hhhhh.eeee....ee.......eeee......eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeee...eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gp3 A   7 AEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSAADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSAKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    16        26        36        46     || 58        68        78        88        98       108       118       128       138       148       160       170       180       190       200       210       220       230       240       250       260       270    || 283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493
                                                                        52|                                                                                                   157|                                                                                                                275|                                                                                                                                                                                                                      
                                                                         55                                                                                                    160                                                                                                                 279                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4gp3b1 B:8-140 Fascin                                                                                                             d4gp3b2 B:141-259 Fascin                                                                                               d4gp3b3 B:260-382 Fascin                                                                                                d4gp3b4 B:383-493 Fascin                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeee.hhhh.eeeee...hhhhheeee.........eee.....eeee.....eeeee...hhhh.eeeee....eeeeee.....eee......eeee...hhhhheeeee....eeeeee....eeeee.......eeeee....hhhhheeeeee..eeeee.....ee.....ee...hhhhh.eeeee..eeeee......eeee....eeee...........eeee....eeeee.....eee.......eeee...hhhhheeeee......eeee.....eeee.....eeeee...hhhhh.eeeee..eeeee.....eee....eeee...hhhhh.eeee....ee..ee..eeeee......eeeee.....eeeeee..eeeee.....eeee.....eeeee......eeeee...eeeeee..eeeee.....eeeee...hhhhhee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gp3 B   8 EAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKVGGRYLKGDHAGVLKASAETVDPASLWEY 493
                                    17        27        37        47    ||  59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       362       372       382       392       402       412       422       432       442       452       462       472       482       492 
                                                                       52|                                                                                                                                                                                                                                                                                                           357|                                                                                                                                    
                                                                        55                                                                                                                                                                                                                                                                                                            361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: beta-Trefoil (385)
(-)
Superfamily: Actin-crosslinking proteins (8)
(-)
Family: Fascin (6)
(-)
Protein domain: Fascin (6)
(-)
Human (Homo sapiens) [TaxId: 9606] (6)
1ad4gp3a1A:7-140
1bd4gp3a2A:141-259
1cd4gp3a3A:260-382
1dd4gp3a4A:383-493
1ed4gp3b1B:8-140
1fd4gp3b2B:141-259
1gd4gp3b3B:260-382
1hd4gp3b4B:383-493

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GP3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GP3)

(-) Gene Ontology  (39, 39)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        FSCN1_HUMAN | Q16658: 1dfc 3llp 3p53 4gov 4goy 4gp0

(-) Related Entries Specified in the PDB File

4gov 4goy 4gp0