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(-) Description

Title :  CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH J1075
 
Authors :  M. Marek, C. Romier
Date :  24 Jul 13  (Deposition) - 14 Aug 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Transferase, Platyhelminths, Epigenetics, Hdac8 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Marek, S. Kannan, A. Hauser, M. Moraes Mourao, S. Caby, V. Cura, D. A. Stolfa, K. Schmidtkunz, J. Lancelot, L. Andrade, J. Renaud, G. Oliveira, W. Sippl, M. Jung, J. Cavarelli, R. J. Pierce, C. Romier
Structural Basis For The Inhibition Of Histone Deacetylase 8 (Hdac8), A Key Epigenetic Player In The Blood Fluke Schistosoma Mansoni.
Plos Pathog. V. 9 03645 2013
PubMed-ID: 24086136  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003645

(-) Compounds

Molecule 1 - HISTONE DEACETYLASE 8
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNEA/TH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 28)

Asymmetric Unit (5, 28)
No.NameCountTypeFull Name
1DMF6Ligand/IonDIMETHYLFORMAMIDE
2GOL2Ligand/IonGLYCEROL
3K8Ligand/IonPOTASSIUM ION
4KMY8Ligand/Ion3-CHLOROBENZOTHIOPHENE-2-CARBOHYDROXAMIC ACID
5ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1DMF1Ligand/IonDIMETHYLFORMAMIDE
2GOL-1Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4KMY2Ligand/Ion3-CHLOROBENZOTHIOPHENE-2-CARBOHYDROXAMIC ACID
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1DMF-1Ligand/IonDIMETHYLFORMAMIDE
2GOL1Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4KMY2Ligand/Ion3-CHLOROBENZOTHIOPHENE-2-CARBOHYDROXAMIC ACID
5ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1DMF3Ligand/IonDIMETHYLFORMAMIDE
2GOL-1Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4KMY2Ligand/Ion3-CHLOROBENZOTHIOPHENE-2-CARBOHYDROXAMIC ACID
5ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 5)
No.NameCountTypeFull Name
1DMF2Ligand/IonDIMETHYLFORMAMIDE
2GOL1Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4KMY2Ligand/Ion3-CHLOROBENZOTHIOPHENE-2-CARBOHYDROXAMIC ACID
5ZN-1Ligand/IonZINC ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:186 , HIS A:188 , ASP A:285 , KMY A:700BINDING SITE FOR RESIDUE ZN A 500
02AC2SOFTWAREASP A:184 , ASP A:186 , HIS A:188 , SER A:207 , VAL A:208BINDING SITE FOR RESIDUE K A 600
03AC3SOFTWAREPHE A:197 , SER A:200 , VAL A:203 , SER A:243 , HOH A:2086BINDING SITE FOR RESIDUE K A 601
04AC4SOFTWARELYS A:20 , PHE A:21 , ASP A:100 , HIS A:141 , HIS A:142 , GLY A:150 , ASP A:186 , HIS A:188 , PHE A:216 , ASP A:285 , GLY A:339 , TYR A:341 , ZN A:500 , HOH A:2122BINDING SITE FOR RESIDUE KMY A 700
05AC5SOFTWAREGLU A:131 , VAL A:132 , LEU A:327 , LYS A:330 , VAL A:331 , VAL A:361BINDING SITE FOR RESIDUE KMY A 701
06AC6SOFTWARETYR A:7 , ILE A:38 , PRO A:39 , LEU A:41 , SER A:42 , ARG A:43 , LEU B:90 , ASP B:93 , SER B:94BINDING SITE FOR RESIDUE DMF A 901
07AC7SOFTWAREASP B:186 , HIS B:188 , ASP B:285 , KMY B:700BINDING SITE FOR RESIDUE ZN B 500
08AC8SOFTWAREASP B:184 , ASP B:186 , HIS B:188 , SER B:207 , VAL B:208BINDING SITE FOR RESIDUE K B 600
09AC9SOFTWAREPHE B:197 , SER B:200 , VAL B:203 , SER B:243 , HOH B:2082BINDING SITE FOR RESIDUE K B 601
10BC1SOFTWARELYS B:20 , PHE B:21 , ASP B:100 , HIS B:141 , HIS B:142 , GLY B:150 , ASP B:186 , HIS B:188 , PHE B:216 , ASP B:285 , GLY B:339 , TYR B:341 , ZN B:500 , HOH B:2061 , HOH B:2120BINDING SITE FOR RESIDUE KMY B 700
11BC2SOFTWAREGLU B:131 , VAL B:132 , LEU B:327 , LYS B:330 , VAL B:331 , VAL B:361BINDING SITE FOR RESIDUE KMY B 701
12BC3SOFTWAREHIS B:189 , GLU B:194 , GLY B:220 , THR B:221 , PHE B:233 , LEU B:234 , ASN B:246BINDING SITE FOR RESIDUE GOL B 800
13BC4SOFTWAREASP C:186 , HIS C:188 , ASP C:285 , KMY C:700BINDING SITE FOR RESIDUE ZN C 500
14BC5SOFTWAREASP C:184 , ASP C:186 , HIS C:188 , SER C:207 , VAL C:208BINDING SITE FOR RESIDUE K C 600
15BC6SOFTWAREPHE C:197 , SER C:200 , VAL C:203 , SER C:243BINDING SITE FOR RESIDUE K C 601
16BC7SOFTWARELYS C:20 , PHE C:21 , ASP C:100 , HIS C:141 , HIS C:142 , GLY C:150 , ASP C:186 , HIS C:188 , PHE C:216 , ASP C:285 , GLY C:339 , TYR C:341 , ZN C:500 , HOH C:2070 , HOH C:2137BINDING SITE FOR RESIDUE KMY C 700
17BC8SOFTWAREGLU C:131 , LEU C:327 , LYS C:330 , VAL C:331 , PRO C:332 , VAL C:361BINDING SITE FOR RESIDUE KMY C 701
18BC9SOFTWARECYS C:15 , PHE C:21 , GLY C:22 , ARG C:24 , TYR C:25 , TYR C:110BINDING SITE FOR RESIDUE DMF C 900
19CC1SOFTWARETYR C:301 , ARG C:352 , LEU C:356 , GLU C:359 , MET C:366BINDING SITE FOR RESIDUE DMF C 901
20CC2SOFTWARETHR A:85 , TYR C:35 , LYS C:36 , LYS C:365 , MET C:366 , THR C:367 , HOH C:2157BINDING SITE FOR RESIDUE DMF C 902
21CC3SOFTWAREASP D:186 , HIS D:188 , ASP D:285 , KMY D:700BINDING SITE FOR RESIDUE ZN D 500
22CC4SOFTWAREASP D:184 , ASP D:186 , HIS D:188 , SER D:207 , VAL D:208BINDING SITE FOR RESIDUE K D 600
23CC5SOFTWAREPHE D:197 , SER D:200 , VAL D:203 , SER D:243 , HOH D:2084BINDING SITE FOR RESIDUE K D 601
24CC6SOFTWAREPHE D:21 , ASP D:100 , HIS D:141 , HIS D:142 , GLY D:150 , ASP D:186 , HIS D:188 , PHE D:216 , ASP D:285 , GLY D:339 , TYR D:341 , ZN D:500 , HOH D:2112BINDING SITE FOR RESIDUE KMY D 700
25CC7SOFTWAREGLU D:131 , VAL D:132 , LEU D:327 , LYS D:330 , VAL D:331 , HOH D:2030BINDING SITE FOR RESIDUE KMY D 701
26CC8SOFTWAREHIS D:189 , GLU D:194 , THR D:219 , GLY D:220 , THR D:221 , PHE D:233 , LEU D:234 , HOH D:2093BINDING SITE FOR RESIDUE GOL D 800
27CC9SOFTWAREARG C:43 , HOH C:2033 , ASP D:93 , SER D:94 , SER D:96BINDING SITE FOR RESIDUE DMF D 900
28DC1SOFTWARETYR B:35 , LYS B:36 , LYS B:365 , MET B:366 , THR B:367 , HOH B:2141 , THR D:85BINDING SITE FOR RESIDUE DMF D 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BZ9)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Phe A:216 -Pro A:217
2Gly A:382 -Pro A:383
3Phe B:216 -Pro B:217
4Gly B:382 -Pro B:383
5Phe C:216 -Pro C:217
6Gly C:382 -Pro C:383
7Phe D:216 -Pro D:217
8Gly D:382 -Pro D:383

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BZ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BZ9)

(-) Exons   (0, 0)

(no "Exon" information available for 4BZ9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:396
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:434
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431    
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLY 435
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhh.eeee......hhhhhhhhhh...hhhhhhhhhhhhhhh..--..hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh..--------...eeeee.....hhhhhhhh.....eeeeeeee.............--------.....hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.....................------------..hhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh...........--------hhhhhhhhhhhhhhhhhhhhh....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz9 A   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCE--ELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSST--------QTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN--------IFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYP------------SLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFP--------DSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLY 435
                                    11        21        31        41        51        61        71        |- |      91       101       111       121       131       141       151       161      |  -     | 181       191       201       211       221 |       -|      241       251       261       271       281       291       301|        -   |   321       331       341       351       361       371       381       391 |       -|      411       421       431    
                                                                                                         80 83                                                                                  168      177                                           223      232                                                                   302          315                                                                           393      402                                 


Chain B from PDB  Type:PROTEIN  Length:414
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431        |-     
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGM------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhhh.---.hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh.---------...eeeee.....hhhhhhhh.....eeeeeeee.............-------......hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhh.................-------......hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh.............-----...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz9 B   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCE---LTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSS---------QTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN-------PIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPN-------DSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHE-----LDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGMGSLVPR 446
                                    11        21        31        41        51        61        71        |-  |     91       101       111       121       131       141       151       161     |   -     | 181       191       201       211       221 |     231       241       251       261       271       281       291       301 |     311       321       331       341       351       361       371       381       391   |   401       411       421       431       441     
                                                                                                         80  84                                                                                167       177                                           223     231                                                                     303     311                                                                                 395   401                                             


Chain C from PDB  Type:PROTEIN  Length:413
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431        |-     
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGM------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhhhh--..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh.---------...eeeee.....hhhhhhhh.....eeeeeeee.............-----........hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.....................-----------...hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh............-----....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz9 C   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCE--ELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSS---------QTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN-----KLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYP-----------CSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPH-----TLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGMGSLVPR 446
                                    11        21        31        41        51        61        71        |- |      91       101       111       121       131       141       151       161     |   -     | 181       191       201       211       221 |     231       241       251       261       271       281       291       301|        -  |    321       331       341       351       361       371       381       391  |    401       411       421       431       441     
                                                                                                         80 83                                                                                 167       177                                           223   229                                                                      302         314                                                                             394   400                                              


Chain D from PDB  Type:PROTEIN  Length:398
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:434
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431    
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLY 435
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh..---------..eeeee.....hhhhhhhh.....eeeeeeee.............-------......hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhh................------------..hhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh...........--------hhhhhhhhhhhhhhhhhhhhh....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz9 D   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSST---------TRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN-------PIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYP------------SLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFP--------DSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLY 435
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      |  -      |181       191       201       211       221 |     231       241       251       261       271       281       291       301|        -   |   321       331       341       351       361       371       381       391 |       -|      411       421       431    
                                                                                                                                                                                                168       178                                          223     231                                                                    302          315                                                                           393      402
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BZ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BZ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BZ9)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (A5H660_SCHMA | A5H660)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

 Visualization

(-) Interactive Views

Asymmetric Unit
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  4bz9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A5H660_SCHMA | A5H660: 4bz5 4bz6 4bz7 4bz8 4cqf 5fue

(-) Related Entries Specified in the PDB File

4bz5 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8
4bz6 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH SAHA
4bz7 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH M344
4bz8 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH J1038