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(-) Description

Title :  CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH J1038
 
Authors :  M. Marek, C. Romier
Date :  24 Jul 13  (Deposition) - 14 Aug 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Platyhelminths, Hdac8, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Marek, S. Kannan, A. Hauser, M. Moraes Mourao, S. Caby, V. Cura, D. A. Stolfa, K. Schmidtkunz, J. Lancelot, L. Andrade, J. Renaud, G. Oliveira, W. Sippl, M. Jung, J. Cavarelli, R. J. Pierce, C. Romier
Structural Basis For The Inhibition Of Histone Deacetylase 8 (Hdac8), A Key Epigenetic Player In The Blood Fluke Schistosoma Mansoni.
Plos Pathog. V. 9 03645 2013
PubMed-ID: 24086136  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003645

(-) Compounds

Molecule 1 - HISTONE DEACETYLASE 8
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNEA/TH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1J384Ligand/Ion(2R)-2-METHYL-3-OXO-4H-1,4-BENZOTHIAZINE-6-CARBOHYDROXAMIC ACID
2K8Ligand/IonPOTASSIUM ION
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1J381Ligand/Ion(2R)-2-METHYL-3-OXO-4H-1,4-BENZOTHIAZINE-6-CARBOHYDROXAMIC ACID
2K-1Ligand/IonPOTASSIUM ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1J381Ligand/Ion(2R)-2-METHYL-3-OXO-4H-1,4-BENZOTHIAZINE-6-CARBOHYDROXAMIC ACID
2K-1Ligand/IonPOTASSIUM ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1J381Ligand/Ion(2R)-2-METHYL-3-OXO-4H-1,4-BENZOTHIAZINE-6-CARBOHYDROXAMIC ACID
2K-1Ligand/IonPOTASSIUM ION
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1J381Ligand/Ion(2R)-2-METHYL-3-OXO-4H-1,4-BENZOTHIAZINE-6-CARBOHYDROXAMIC ACID
2K-1Ligand/IonPOTASSIUM ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:186 , HIS A:188 , ASP A:285 , J38 A:700BINDING SITE FOR RESIDUE ZN A 500
02AC2SOFTWAREPHE A:197 , SER A:200 , VAL A:203 , SER A:243 , HOH A:2082BINDING SITE FOR RESIDUE K A 600
03AC3SOFTWAREASP A:184 , ASP A:186 , HIS A:188 , SER A:207 , VAL A:208BINDING SITE FOR RESIDUE K A 601
04AC4SOFTWAREASP A:100 , HIS A:141 , HIS A:142 , GLY A:150 , PHE A:151 , ASP A:186 , HIS A:188 , PHE A:216 , ASP A:285 , HIS A:292 , TYR A:341 , ZN A:500 , ASP B:50BINDING SITE FOR RESIDUE J38 A 700
05AC5SOFTWAREASP B:186 , HIS B:188 , ASP B:285 , J38 B:700BINDING SITE FOR RESIDUE ZN B 500
06AC6SOFTWAREPHE B:197 , SER B:200 , VAL B:203 , SER B:243 , HOH B:2060BINDING SITE FOR RESIDUE K B 600
07AC7SOFTWAREASP B:184 , ASP B:186 , HIS B:188 , SER B:207 , VAL B:208BINDING SITE FOR RESIDUE K B 601
08AC8SOFTWAREASP A:50 , ASP B:100 , HIS B:141 , HIS B:142 , GLY B:150 , PHE B:151 , ASP B:186 , HIS B:188 , PHE B:216 , ASP B:285 , HIS B:292 , TYR B:341 , ZN B:500 , HOH B:2037 , HOH B:2046BINDING SITE FOR RESIDUE J38 B 700
09AC9SOFTWAREASP C:186 , HIS C:188 , ASP C:285 , J38 C:700BINDING SITE FOR RESIDUE ZN C 500
10BC1SOFTWAREASP C:184 , ASP C:186 , HIS C:188 , SER C:207 , VAL C:208BINDING SITE FOR RESIDUE K C 600
11BC2SOFTWAREPHE C:197 , SER C:200 , VAL C:203 , SER C:243 , HOH C:2080BINDING SITE FOR RESIDUE K C 601
12BC3SOFTWAREHIS C:141 , HIS C:142 , GLY C:150 , PHE C:151 , ASP C:186 , HIS C:188 , PHE C:216 , ASP C:285 , HIS C:292 , TYR C:341 , ZN C:500 , ASP D:50BINDING SITE FOR RESIDUE J38 C 700
13BC4SOFTWAREASP D:186 , HIS D:188 , ASP D:285 , J38 D:700BINDING SITE FOR RESIDUE ZN D 500
14BC5SOFTWAREPHE D:197 , SER D:200 , VAL D:203 , SER D:243 , HOH D:2073BINDING SITE FOR RESIDUE K D 600
15BC6SOFTWAREASP D:184 , ASP D:186 , HIS D:188 , SER D:207 , VAL D:208BINDING SITE FOR RESIDUE K D 601
16BC7SOFTWAREASP C:50 , HOH C:2035 , ASP D:100 , HIS D:141 , HIS D:142 , GLY D:150 , PHE D:151 , ASP D:186 , HIS D:188 , PHE D:216 , ASP D:285 , HIS D:292 , TYR D:341 , ZN D:500BINDING SITE FOR RESIDUE J38 D 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BZ8)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Phe A:216 -Pro A:217
2Gly A:382 -Pro A:383
3Phe B:216 -Pro B:217
4Gly B:382 -Pro B:383
5Phe C:216 -Pro C:217
6Gly C:382 -Pro C:383
7Phe D:216 -Pro D:217
8Gly D:382 -Pro D:383

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BZ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BZ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4BZ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:426
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421      
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYD 427
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh...--------..eeeee.....hhhhhhhh.....eeeeeeee.............------.......hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhh.................-----------..hhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh...........--------hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bz8 A   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTP--------TRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN------LPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPN-----------SLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFP--------DSIQKHHRRILEQLRNYADLNKLIYD 427
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       | -      |181       191       201       211       221 |     231       241       251       261       271       281       291       301 |       -   |   321       331       341       351       361       371       381       391 |       -|      411       421      
                                                                                                                                                                                                 169      178                                          223    230                                                                      303         315                                                                           393      402                         


Chain B from PDB  Type:PROTEIN  Length:415
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431        |-     
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGM------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh..--------...eeeee.....hhhhhhhh.....eeeeeeee.............------.......hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.....................------------..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh............----.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz8 B   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSST--------QTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN------LPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYP------------SLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPH----KTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGMGSLVPR 446
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      |  -     | 181       191       201       211       221 |     231       241       251       261       271       281       291       301|        -   |   321       331       341       351       361       371       381       391  |    401       411       421       431       441     
                                                                                                                                                                                                168      177                                           223    230                                                                     302          315                                                                            394  399                                               


Chain C from PDB  Type:PROTEIN  Length:413
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431        |-     
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGM------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhhh.--..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh.----------..eeeee.....hhhhhhhh.....eeeeeeee..............---.........hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.....................------------..hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh............-----....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz8 C   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCE--ELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSS----------TRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNM---DKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYP------------SLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPH-----TLDSIQKHHRRILEQLRNYADLNKLIYDYDQVYQLYNLTGMGSLVPR 446
                                    11        21        31        41        51        61        71        |- |      91       101       111       121       131       141       151       161     |   -      |181       191       201       211       221  |   |231       241       251       261       271       281       291       301|        -   |   321       331       341       351       361       371       381       391  |    401       411       421       431       441     
                                                                                                         80 83                                                                                 167        178                                           224 228                                                                       302          315                                                                            394   400                                              


Chain D from PDB  Type:PROTEIN  Length:394
 aligned with A5H660_SCHMA | A5H660 from UniProtKB/TrEMBL  Length:440

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
         A5H660_SCHMA     2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSSTPPETSPNRQTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWNMVDNDKLPIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYPNLNLDSDCDSECSLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFPHESHNKTLDSIQKHHRRILEQLRNYADLNKLIYDYDQV 431
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhh......hhhhhhhhhhhhh.hhhhheee......hhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh....eeee...................hhhhhhhhhhhh.---------...eeeee.....hhhhhhhh.....eeeeeeee.............-------......hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeee.hhhh................------------..hhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhh...........--------hhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz8 D   2 SVGIVYGDQYRQLCCSSPKFGDRYALVMDLINAYKLIPELSRVPPLQWDSPSRMYEAVTAFHSTEYVDALKKLQMLHCEEKELTADDELLMDSFSLNYDCPGFPSVFDYSLAAVQGSLAAASALICRHCEVVINWGGGWHHAKRSEASGFCYLNDIVLAIHRLVSS---------QTRVLYVDLDLHHGDGVEEAFWYSPRVVTFSVHHASPGFFPGTGTWN-------PIFLNGAGRGRFSAFNLPLEEGINDLDWSNAIGPILDSLNIVIQPSYVVVQCGADCLATDPHRIFRLTNFYP------------SLSGYLYAIKKILSWKVPTLILGGGGYNFPDTARLWTRVTALTIEEVKGKKMTISPEIPEHSYFSRYGPDFELDIDYFP--------DSIQKHHRRILEQLRNYADLNKLIYDYDQV 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161     |   -     | 181       191       201       211       221 |     231       241       251       261       271       281       291       301|        -   |   321       331       341       351       361       371       381       391 |       -|      411       421       431
                                                                                                                                                                                               167       177                                           223     231                                                                    302          315                                                                           393      402
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BZ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BZ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BZ8)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (A5H660_SCHMA | A5H660)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Cis Peptide Bonds
    Gly A:382 - Pro A:383   [ RasMol ]  
    Gly B:382 - Pro B:383   [ RasMol ]  
    Gly C:382 - Pro C:383   [ RasMol ]  
    Gly D:382 - Pro D:383   [ RasMol ]  
    Phe A:216 - Pro A:217   [ RasMol ]  
    Phe B:216 - Pro B:217   [ RasMol ]  
    Phe C:216 - Pro C:217   [ RasMol ]  
    Phe D:216 - Pro D:217   [ RasMol ]  
 
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  4bz8
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  A5H660_SCHMA | A5H660
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A5H660_SCHMA | A5H660: 4bz5 4bz6 4bz7 4bz9 4cqf 5fue

(-) Related Entries Specified in the PDB File

4bz5 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8
4bz6 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH SAHA
4bz7 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH M344
4bz9 CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WITH J1075