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(-) Description

Title :  ANTHRAX TOXIN LETHAL FACTOR WITH LIGAND-INDUCED BINDING POCKET
 
Authors :  K. M. Maize, B. C. Finzel
Date :  14 Jan 15  (Deposition) - 11 Nov 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Anthrax Toxin, Lethal Factor, Metalloproteinase, Metalloprotease, Structural Dynamics, Ligand-Induced Conformational Change, Toxin, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Maize, E. K. Kurbanov, R. L. Johnson, E. A. Amin, B. C. Finzel
Ligand-Induced Expansion Of The S1' Site In The Anthrax Toxin Lethal Factor.
Febs Lett. V. 589 3836 2015
PubMed-ID: 26578066  |  Reference-DOI: 10.1016/J.FEBSLET.2015.11.005

(-) Compounds

Molecule 1 - LETHAL FACTOR
    Chains: A
    EC Number: 3.4.24.83
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG10
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 298-809
    Gene: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172
    Mutation: YES
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
141S1Ligand/IonN~2~-[(4-FLUORO-3-METHOXYPHENYL)SULFONYL]-N-HYDROXY-N~2~-(2-METHYLPROPYL)-D-VALINAMIDE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:655 , LYS A:656 , GLY A:657 , LEU A:668 , GLY A:674 , VAL A:675 , LEU A:677 , ASP A:680 , GLY A:683 , PHE A:684 , HIS A:686 , GLU A:687 , HIS A:690 , TYR A:728 , GLU A:735 , ZN A:802binding site for residue 41S A 801
2AC2SOFTWAREHIS A:686 , HIS A:690 , GLU A:735 , 41S A:801binding site for residue ZN A 802
3AC3SOFTWAREARG A:391 , ASP A:394 , SER A:403 , THR A:635 , ASN A:638binding site for residue EDO A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XM7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XM7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XM7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XM7)

(-) Exons   (0, 0)

(no "Exon" information available for 4XM7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhh....eeeeehhhhhhhhhhhh..........hhhhhhhhhh...eeee....eee...........eeeeee......eeee...eeee...eeeeeeeeeeee....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.......eeee....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...eeee..hhhhhhhhhh...hhhhh....eeeehhhheeeee.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xm7 A 265 LSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSILLHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINSL 777
                                   274       284       294       304       314       324       334       344  ||   357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777
                                                                                                            347|                                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                             351
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XM7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XM7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XM7)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEF_BACAN | P15917: 1j7n 1jky 1pwp 1pwq 1pwu 1pwv 1pww 1yqy 1zxv 2l0r 3kwv 4dv8 4pkq 4pkr 4pks 4pkt 4pku 4pkv 4pkw 4wf6 4xm6 4xm8 5d1s 5d1t 5d1u

(-) Related Entries Specified in the PDB File

1yqy 4pkq 4pkr 4pks 4pkt 4pku 4pkv 4pkw 4wf6 4xm6 4xm8