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(-) Description

Title :  ANTHRAX TOXIN LETHAL FACTOR WITH BOUND SMALL MOLECULE INHIBITOR GM6001
 
Authors :  K. M. Maize, T. De La Mora, B. C. Finzel
Date :  15 May 14  (Deposition) - 12 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Anthrax Toxin, Lethal Factor, Metalloproteinase, Metalloprotease, Structural Dynamics, Ligand-Induced Conformational Change, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Maize, E. K. Kurbanov, T. De La Mora-Rey, T. W. Geders, D. J. Hwang, M. A. Walters, R. L. Johnson, E. A. Amin, B. C. Finzel
Anthrax Toxin Lethal Factor Domain 3 Is Highly Mobile And Responsive To Ligand Binding.
Acta Crystallogr. , Sect. D V. 70 2813 2014
PubMed-ID: 25372673  |  Reference-DOI: 10.1107/S1399004714018161

(-) Compounds

Molecule 1 - LETHAL FACTOR
    Chains: A
    EC Number: 3.4.24.83
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG10
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 298-809
    Gene: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172
    Mutation: YES
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2GM61Ligand/Ion3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE
3GOL2Ligand/IonGLYCEROL
4ZN1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:686 , HIS A:690 , GLU A:735 , GM6 A:802binding site for residue ZN A 801
2AC2SOFTWAREASP A:328 , PHE A:329 , VAL A:653 , HIS A:654 , SER A:655 , LYS A:656 , GLY A:657 , LYS A:673 , GLY A:674 , VAL A:675 , LEU A:677 , HIS A:686 , GLU A:687 , HIS A:690 , TYR A:728 , GLU A:735 , ZN A:801 , GOL A:804binding site for residue GM6 A 802
3AC3SOFTWAREPHE A:718 , LYS A:719 , SER A:723 , ARG A:730 , HOH A:943 , HOH A:973 , HOH A:974binding site for residue GOL A 803
4AC4SOFTWARELEU A:658 , TYR A:659 , HIS A:690 , GLU A:735 , GM6 A:802 , HOH A:1247binding site for residue GOL A 804
5AC5SOFTWARELYS A:295 , GLN A:411 , ASP A:495 , HOH A:920binding site for residue EDO A 805
6AC6SOFTWAREPRO A:661 , ARG A:664 , SER A:705 , HOH A:1232 , HOH A:1272binding site for residue EDO A 806

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PKW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PKW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PKW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PKW)

(-) Exons   (0, 0)

(no "Exon" information available for 4PKW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:491
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.............eeeeehhhhhhhhhhh...........hhhhhhhhhhh..eeee....eee...........eeeeee......eeee...eeee...eeeeeeeeeeeee..eeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.......eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhh...hhhhh....eeeehhhheeeee.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pkw A 266 SRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSILLHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINS 776
                                   275       285       295       305       315       325       335       345 ||    375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775 
                                                                                                           347|                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                            368
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PKW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PKW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PKW)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEF_BACAN | P15917: 1j7n 1jky 1pwp 1pwq 1pwu 1pwv 1pww 1yqy 1zxv 2l0r 3kwv 4dv8 4pkq 4pkr 4pks 4pkt 4pku 4pkv 4wf6 4xm6 4xm7 4xm8 5d1s 5d1t 5d1u

(-) Related Entries Specified in the PDB File

1j7n THE FULL-LENGTH PROTEIN WITH BOUND ZINC IN A P21 SPACEGROUP
1jky THE FULL-LENGTH PROTEIN IN A I4132 SPACEGROUP
1pwp THE FULL-LENGTH PROTEIN COMPLEXED WITH SMALL MOLECULE INHIBITOR NSC 12155 IN A P21 SPACEGROUP
1pwq THE FULL-LENGTH PROTEIN COMPLEXED WITH A METAL-CHELATING PEPTIDYL SMALL MOLECULE INHIBITOR IN A P21 SPACEGROUP
1pwu THE FULL-LENGTH PROTEIN COMPLEXED WITH GM6001 IN A P21 SPACEGROUP
1pwv THE FULL-LENGTH PROTEIN COMPLEXED WITH AN OPTIMIZED PEPTIDE SUBSTRATE IN A P21 SPACEGROUP
1pww THE FULL-LENGTH INACTIVE MUTANT PROTEIN COMPLEXED WITH AN OPTIMIZED PEPTIDE SUBSTRATE AND ZINC IN A P21 SPACEGROUP.
1yqy THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
1zxv THE FULL-LENGTH PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P21 SPACEGROUP
4dv8 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pkq
4pkr
4pks
4pkt
4pku
4pkv