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(-) Description

Title :  ANTHRAX TOXIN LETHAL FACTOR WITH BOUND ZINC
 
Authors :  K. M. Maize, B. C. Finzel
Date :  15 May 14  (Deposition) - 12 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Anthrax Toxin, Lethal Factor, Metalloproteinase, Metalloprotease, Structural Dynamics, Ligand-Induced Conformational Change, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Maize, E. K. Kurbanov, T. De La Mora-Rey, T. W. Geders, D. J. Hwang, M. A. Walters, R. L. Johnson, E. A. Amin, B. C. Finzel
Anthrax Toxin Lethal Factor Domain 3 Is Highly Mobile And Responsive To Ligand Binding.
Acta Crystallogr. , Sect. D V. 70 2813 2014
PubMed-ID: 25372673  |  Reference-DOI: 10.1107/S1399004714018161

(-) Compounds

Molecule 1 - LETHAL FACTOR
    Chains: A
    EC Number: 3.4.24.83
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG10
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 298-809
    Gene: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172
    Mutation: YES
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PGE1Ligand/IonTRIETHYLENE GLYCOL
3ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:686 , HIS A:690 , GLU A:735 , HOH A:1046 , HOH A:1048binding site for residue ZN A 801
2AC2SOFTWAREGLN A:522 , ARG A:523 , ASN A:524binding site for residue PGE A 802
3AC3SOFTWAREASN A:433 , LYS A:434 , ILE A:435 , TYR A:436binding site for residue EDO A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PKQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PKQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PKQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PKQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4PKQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:513
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhh....eeeeee.hhhhhhhhhhhh........hhhhhhhhhhh..eeee....eee.........eeeeeeee......eeee...eeee...eeeeeeeeeeee....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh........eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhh...hhhhh....eeeehhhheeeee.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pkq A 266 SRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSILLHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINSLV 778
                                   275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PKQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PKQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PKQ)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  4pkq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEF_BACAN | P15917: 1j7n 1jky 1pwp 1pwq 1pwu 1pwv 1pww 1yqy 1zxv 2l0r 3kwv 4dv8 4pkr 4pks 4pkt 4pku 4pkv 4pkw 4wf6 4xm6 4xm7 4xm8 5d1s 5d1t 5d1u

(-) Related Entries Specified in the PDB File

1j7n THE FULL-LENGTH PROTEIN WITH BOUND ZINC IN A P21 SPACEGROUP
1jky THE FULL-LENGTH PROTEIN IN A I4132 SPACEGROUP
1pwp THE FULL-LENGTH PROTEIN COMPLEXED WITH SMALL MOLECULE INHIBITOR NSC 12155 IN A P21 SPACEGROUP
1pwq THE FULL-LENGTH PROTEIN COMPLEXED WITH A METAL-CHELATING PEPTIDYL SMALL MOLECULE INHIBITOR IN A P21 SPACEGROUP
1pwu THE FULL-LENGTH PROTEIN COMPLEXED WITH GM6001 IN A P21 SPACEGROUP
1pwv THE FULL-LENGTH PROTEIN COMPLEXED WITH AN OPTIMIZED PEPTIDE SUBSTRATE IN A P21 SPACEGROUP
1pww THE FULL-LENGTH INACTIVE MUTANT PROTEIN COMPLEXED WITH AN OPTIMIZED PEPTIDE SUBSTRATE AND ZINC IN A P21 SPACEGROUP.
1yqy THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
1zxv THE FULL-LENGTH PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P21 SPACEGROUP
4dv8 THE N-TERMINALLY TRUNCATED PROTEIN COMPLEXED WITH A SMALL MOLECULE INHIBITOR IN A P212121 SPACEGROUP
4pkr
4pks
4pkt
4pku
4pkv
4pkw