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(-) Description

Title :  ANTHRAX TOXIN LETHAL FACTOR WITH LIGAND-INDUCED BINDING POCKET
 
Authors :  K. M. Maize, T. De La Mora-Rey, B. C. Finzel
Date :  14 Jan 15  (Deposition) - 11 Nov 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Anthrax Toxin, Lethal Factor, Metalloproteinase, Metalloprotease, Structural Dynamics, Ligand-Induced Conformational Change, Toxin, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Maize, E. K. Kurbanov, R. L. Johnson, E. A. Amin, B. C. Finzel
Ligand-Induced Expansion Of The S1' Site In The Anthrax Toxin Lethal Factor.
Febs Lett. V. 589 3836 2015
PubMed-ID: 26578066  |  Reference-DOI: 10.1016/J.FEBSLET.2015.11.005

(-) Compounds

Molecule 1 - LETHAL FACTOR
    Chains: A
    EC Number: 3.4.24.83
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG10
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 298-809
    Gene: LEF, PXO1-107, BXA0172, GBAA_PXO1_0172
    Mutation: YES
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: LF,ANTHRAX LETHAL TOXIN ENDOPEPTIDASE COMPONENT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
141R1Ligand/IonN~2~-[(4-FLUORO-3-METHYLPHENYL)SULFONYL]-N-HYDROXY-N~2~-(2-METHYLPROPYL)-D-VALINAMIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3ZN1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:655 , LYS A:656 , GLY A:657 , LEU A:668 , GLY A:674 , VAL A:675 , LEU A:677 , GLY A:683 , HIS A:686 , GLU A:687 , TYR A:728 , GLU A:735 , ZN A:802 , HOH A:977binding site for residue 41R A 801
2AC2SOFTWAREHIS A:686 , HIS A:690 , GLU A:735 , 41R A:801binding site for residue ZN A 802
3AC3SOFTWAREGLU A:569 , ALA A:573binding site for residue EDO A 803
4AC4SOFTWAREASP A:394 , SER A:403 , THR A:635 , PRO A:637 , ASN A:638 , HOH A:929binding site for residue EDO A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XM6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XM6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XM6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XM6)

(-) Exons   (0, 0)

(no "Exon" information available for 4XM6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:486
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.............eeeeehhhhhhhhhhhh..........hhhhhhhhhhh..eeee....eee...........eeeeee......eeee...eeee...eeeeeeeeeeee....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh........eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhh...hhhhh....eeeehhhheeeee.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xm6 A 266 SRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSLSTEEKEFLKKLQIDLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGLEIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSILLHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINS 776
                                   275       285       295       305       315       325 ||    337      |370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770      
                                                                                       327|           344|                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                        330            368
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XM6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XM6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XM6)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEF_BACAN | P15917: 1j7n 1jky 1pwp 1pwq 1pwu 1pwv 1pww 1yqy 1zxv 2l0r 3kwv 4dv8 4pkq 4pkr 4pks 4pkt 4pku 4pkv 4pkw 4wf6 4xm7 4xm8 5d1s 5d1t 5d1u

(-) Related Entries Specified in the PDB File

1yqy 4pkq 4pkr 4pks 4pkt 4pku 4pkv 4pkw 4wf6 4xm7 4xm8