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(-) Description

Title :  CRYSTAL STRUCTURE OF SUMO1 IN COMPLEX WITH PHOSPHORYLATED DAXX
 
Authors :  L. Cappadocia, X. H. Mascle, V. Bourdeau, S. Tremblay-Belzile, M. Chak Margot, M. Lussier-Price, J. Wada, K. Sakaguchi, M. Aubry, G. Ferbeyr J. G. Omichinski
Date :  01 Oct 14  (Deposition) - 31 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Sumo1, Daxx, Sumo Interaction Motif, Phosphosim (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Cappadocia, X. H. Mascle, V. Bourdeau, S. Tremblay-Belzile, M. Chaker-Margot, M. Lussier-Price, J. Wada, K. Sakaguchi, M. Aubry, G. Ferbeyre, J. G. Omichinski
Structural And Functional Characterization Of The Phosphorylation-Dependent Interaction Between Pml And Sumo1
Structure V. 23 126 2015
PubMed-ID: 25497731  |  Reference-DOI: 10.1016/J.STR.2014.10.015

(-) Compounds

Molecule 1 - SMALL UBIQUITIN-RELATED MODIFIER 1
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX2T
    Expression System Strain: TOPP2
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 17-97
    Gene: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, SMT3C,UBIQUITIN-LIKE PROTEIN UBL1
 
Molecule 2 - DAXX
    Chains: B, D
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SEP3Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (0, 0)

(no "Site" information available for 4WJP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WJP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gln A:94 -Thr A:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WJP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WJP)

(-) Exons   (0, 0)

(no "Exon" information available for 4WJP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:79
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeeeee....hhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  4wjp A 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
                                    28        38        48        58        68        78        88         


Chain B from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .....eee... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  4wjp B  6 EAEERIIVLsD 16
                                    15 
                                    15-SEP


Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                            
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....eeeeeee....hhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  4wjp C 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94
                                    27        37        47        57        67        77        87       


Chain D from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ....eee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  4wjp D  7 AEERIIVLsDsD 18
                                    16| 
                                   15-SEP
                                     17-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WJP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WJP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WJP)

(-) Gene Ontology  (46, 46)

Asymmetric Unit(hide GO term definitions)

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  SUMO1_HUMAN | P63165
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SUMO1_HUMAN | P63165: 1a5r 1tgz 1wyw 1y8r 1z5s 2asq 2bf8 2g4d 2io2 2iy0 2iy1 2kqs 2las 2mw5 2n1a 2n1v 2pe6 2uyz 2vrr 3kyc 3kyd 3rzw 3uip 4wjn 4wjo 4wjq 5aek 5b7a 5elj 5ghd

(-) Related Entries Specified in the PDB File

4wjn 4wjo 4wjq