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(-) Description

Title :  DOCKED STRUCTURE BETWEEN SUMO1 AND ZZ-DOMAIN FROM CBP
 
Authors :  C. Diehl
Date :  26 Mar 15  (Deposition) - 04 May 16  (Release) - 22 Jun 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (6x)
NMR Structure *:  A,B  (1x)
Keywords :  Protein-Protein Complex, Docked Structure, Sumo1, Sim, Zz-Domain, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Diehl, M. Akke, S. Bekker-Jensen, N. Mailand, W. Streicher, M. Wikstrom
Structural Analysis Of A Complex Between Small Ubiquitin-Like Modifier 1 (Sumo1) And The Zz Domain Of Creb-Binding Protein (Cbp/P300) Reveals A New Interaction Surface On Sumo.
J. Biol. Chem. V. 291 12658 2016
PubMed-ID: 27129204  |  Reference-DOI: 10.1074/JBC.M115.711325

(-) Compounds

Molecule 1 - SMALL UBIQUITIN-RELATED MODIFIER 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: DE3 ROSETTA
    Expression System Taxid: 469008
    Expression System Vector: PNIC28
    Gene: OK/SW-CL.43, SMT3C, SMT3H3, SUMO1, UBL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SUMO-1, GAP-MODIFYING PROTEIN 1, GMP1, SMT3 HOMOLOG 3, SENTRIN, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE PROTEIN SMT3C, SMT3C, UBIQUITIN-LIKE PROTEIN UBL1
 
Molecule 2 - CREB-BINDING PROTEIN
    Chains: B
    EC Number: 2.3.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: DE3 ROSETTA
    Expression System Taxid: 469008
    Expression System Vector: PNIC28
    Gene: CBP, CREBBP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
NMR Structure (6x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS B:209 , CYS B:212 , CYS B:231 , CYS B:234BINDING SITE FOR RESIDUE ZN B 300
2AC2SOFTWARECYS B:222 , CYS B:225 , HIS B:240 , HIS B:242BINDING SITE FOR RESIDUE ZN B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N1A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N1A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N1A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N1A)

(-) Exons   (0, 0)

(no "Exon" information available for 2N1A)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeeee.........eeee....hhhhhhhhhhh..............................eeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2n1a A  -1 GSMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
                                     8        18        28        38        48        58        68        78        88        98   


Chain B from PDB  Type:PROTEIN  Length:53
                                                                                     
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...................eee.....eeehhhhhhhhh....eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 2n1a B 201 GQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHAHKMVKWGLGLDD 253
                                   210       220       230       240       250
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N1A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N1A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N1A)

(-) Gene Ontology  (104, 112)

NMR Structure(hide GO term definitions)

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  2n1a
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  CBP_HUMAN | Q92793
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  SUMO1_HUMAN | P63165
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  2.3.1.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBP_HUMAN | Q92793: 1jsp 1liq 1rdt 1wo3 1wo4 1wo5 1wo6 1wo7 1zoq 2d82 2kje 2kwf 2l84 2l85 2lxs 2lxt 2rny 3dwy 3p1c 3p1d 3p1e 3p1f 3svh 4a9k 4n3w 4n4f 4nr4 4nr5 4nr6 4nr7 4nyv 4nyw 4nyx 4ouf 4tqn 4ts8 4whu 4yk0 5cgp 5dbm 5eic 5eng 5ep7 5gh9 5h85 5i83 5i86 5i89 5i8b 5i8g 5j0d 5jem 5ktu 5ktw 5ktx 5mpz 5mqe 5mqg 5mqk 5tb6
        SUMO1_HUMAN | P63165: 1a5r 1tgz 1wyw 1y8r 1z5s 2asq 2bf8 2g4d 2io2 2iy0 2iy1 2kqs 2las 2mw5 2n1v 2pe6 2uyz 2vrr 3kyc 3kyd 3rzw 3uip 4wjn 4wjo 4wjp 4wjq 5aek 5b7a 5elj 5ghd

(-) Related Entries Specified in the PDB File

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