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(-) Description

Title :  SOLUTION STRUCTURE OF LYS39 ACETYLATED HUMAN SUMO1
 
Authors :  M. T. Naik, N. Naik, H. Shih, T. Huang
Date :  19 Jun 16  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Ubiquitin-Like Protein, Acetylated Protein, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. T. Naik, N. Naik, H. Shih, T. Huang
Structures Of Human Sumo
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SMALL UBIQUITIN-RELATED MODIFIER 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PCDFDUET-1
    Expression System Vector Type: PCDFDUET-1
    Fragment: UNP RESIDUES 1-97
    Gene: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: LYS39 ACETYLATED MATURE SMALL UBIQUITIN-RELATED MODIFIER 1 (SUMO1) RESIDUES 1-14 (MGSSHHHHHHSQDP) REPRESENT A NON- NATIVE PURIFICATION TAG. THESE RESIDUES WERE NEITHER ASSIGNED NOR INCLUDED IN STRUCTURE CALCULATION.
    Other Details - Source: PLASMID PCDF PYLT-1 WITH SUMO INSERT WITH K39STOP MUTATION (WITH AMBER CODON) AND PACKRS-3 AS DESCRIBED IN NEUMANN ET AL., MOL CELL, 36, 153, 2009
    Synonym: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, SMT3C,UBIQUITIN-LIKE PROTEIN UBL1

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE

(-) Sites  (0, 0)

(no "Site" information available for 5GHD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GHD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GHD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GHD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GHD)

(-) Exons   (0, 0)

(no "Exon" information available for 5GHD)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:97
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee....eeeeee....hhhhhhhhhhhhhh.....eeeee..ee.....hhhhhh....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  5ghd A  1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVkMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
                                    10        20        30        40        50        60        70        80        90       
                                                                 39-ALY
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GHD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GHD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GHD)

(-) Gene Ontology  (46, 46)

NMR Structure(hide GO term definitions)

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  SUMO1_HUMAN | P63165
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SUMO1_HUMAN | P63165: 1a5r 1tgz 1wyw 1y8r 1z5s 2asq 2bf8 2g4d 2io2 2iy0 2iy1 2kqs 2las 2mw5 2n1a 2n1v 2pe6 2uyz 2vrr 3kyc 3kyd 3rzw 3uip 4wjn 4wjo 4wjp 4wjq 5aek 5b7a 5elj

(-) Related Entries Specified in the PDB File

2n1v RELATED ID: 25576 RELATED DB: BMRB RELATED ID: 36008 RELATED DB: BMRB
5b7a
5ghb
5ghc