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(-) Description

Title :  HEXAMERIC HIV-1 CA IN COMPLEX WITH PF3450074
 
Authors :  A. J. Price, D. A. Jacques, L. C. James
Date :  11 Jul 14  (Deposition) - 12 Nov 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Capsid, Inhibitor, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Price, D. A. Jacques, W. A. Mcewan, A. J. Fletcher, S. Essig, J. W. Chin, U. D. Halambage, C. Aiken, L. C. James
Host Cofactors And Pharmacologic Ligands Share An Essential Interface In Hiv-1 Capsid That Is Lost Upon Disassembly.
Plos Pathog. V. 10 04459 2014
PubMed-ID: 25356722  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004459

(-) Compounds

Molecule 1 - CAPSID PROTEIN P24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GAG
    Mutation: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B
    Organism Taxid: 11698
    Strain: ISOLATE NY5
    Synonym: PR55GAG

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
11B01Ligand/IonN-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE
2CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
11B06Ligand/IonN-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:61 , GLN A:63 , ARG A:173 , HOH A:444 , HOH A:472binding site for residue CL A 301
2AC2SOFTWAREASN A:53 , LEU A:56 , ASN A:57 , GLN A:63 , MET A:66 , LYS A:70 , ALA A:105 , THR A:107 , TYR A:130 , ARG A:173 , GLN A:176 , SER A:178 , GLN A:179binding site for residue 1B0 A 302

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:14 -A:45
2A:198 -A:218

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U0E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U0E)

(-) Exons   (0, 0)

(no "Exon" information available for 4U0E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....ee...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhh.....hhhhhhh.hhhhhhhhhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0e A   1 PIVQNQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQETETLLVQNANPDCKTILKALGPGATLEEMMTACQ 219
                                ||  13        23        33        43        53        63        73        83   ||   95       105       115       125       135       145       155       165       175    || 190       200       210         
                                5|                                                                            87|                                                                                       180|                                 
                                 9                                                                             90                                                                                        186
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U0E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U0E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U0E)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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  4u0e
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  GAG_HV1N5 | P12493
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAG_HV1N5 | P12493: 1gwp 1hiw 1uph 2c55 2x2d 3gv2 4u0a 4u0b 4u0c 4u0d 4u0f 4xfx 4xfy 4xfz 4xro 4xrq 5hgl 5hgm 5hgn 5hgo 5hgp 5irt 5jpa 5l93 5o2u 5upw

(-) Related Entries Specified in the PDB File

4u0a 4u0b 4u0c 4u0d