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(-) Description

Title :  DIMERIZATION INTERFACE OF THE NONCRYSTALLINE HIV-1 CAPSID PROTEIN LATTICE FROM SOLID STATE NMR SPECTROSCOPY OF TUBULAR ASSEMBLIES
 
Authors :  M. J. Bayro, R. Tycko
Date :  14 Mar 16  (Deposition) - 22 Jun 16  (Release) - 27 Jul 16  (Revision)
Method :  SOLID-STATE NMR
Resolution :  NOT APPLICABLE
Chains :  Asym. Unit :  A,B  (20x)
Biol. Unit 1:  A,B  (1x)
Keywords :  Tubular Assembly, Symmetric Dimer, Noncrystalline Lattice, Supramolecular Structure, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Bayro, R. Tycko
Structure Of The Dimerization Interface In The Mature Hiv-1 Capsid Protein Lattice From Solid State Nmr Of Tubular Assemblies.
J. Am. Chem. Soc. V. 138 8538 2016
PubMed-ID: 27298207  |  Reference-DOI: 10.1021/JACS.6B03983

(-) Compounds

Molecule 1 - CAPSID PROTEIN P24
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE NY5)
    Organism Taxid: 11698
    Strain: ISOLATE NY5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit (20x): AB
Biological Unit 1 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IRT)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IRT)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IRT)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 5irt A 175 EQASQEVKNWMTETLLVQN 193
                                   184         


Chain B from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 5irt B 175 EQASQEVKNWMTETLLVQN 193
                                   184
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (21, 21)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAG_HV1N5 | P12493: 1gwp 1hiw 1uph 2c55 2x2d 3gv2 4u0a 4u0b 4u0c 4u0d 4u0e 4u0f 4xfx 4xfy 4xfz 4xro 4xrq 5hgl 5hgm 5hgn 5hgo 5hgp 5jpa 5l93 5o2u 5upw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5IRT)