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(-) Description

Title :  HEXAMERIC HIV-1 CA R18G MUTANT
 
Authors :  D. A. Jacques, L. C. James
Date :  08 Jan 16  (Deposition) - 10 Aug 16  (Release) - 31 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Capsid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Jacques, W. A. Mcewan, L. Hilditch, A. J. Price, G. J. Towers, L. C. James
Hiv-1 Uses Dynamic Capsid Pores To Import Nucleotides And Fuel Encapsidated Dna Synthesis.
Nature V. 536 349 2016
PubMed-ID: 27509857  |  Reference-DOI: 10.1038/NATURE19098

(-) Compounds

Molecule 1 - CAPSID PROTEIN P24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GAG
    Mutation: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Synonym: PR55GAG

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HGO)

(-) Sites  (0, 0)

(no "Site" information available for 5HGO)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:14 -A:45
2A:198 -A:218

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HGO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HGO)

(-) Exons   (0, 0)

(no "Exon" information available for 5HGO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hgo A   1 PIVQNLQGQMVHQCISPGTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQTLLVQNANPDCKTILKALGPGATLEEMMTACQ 219
                                    10        20        30        40        50        60        70        80      ||93       103       113       123       133       143       153       163       173  ||   194       204       214     
                                                                                                                 87|                                                                                  176|                               
                                                                                                                  91                                                                                   188
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HGO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HGO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HGO)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Asn A:121 - Pro A:122   [ RasMol ]  
 
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  5hgo
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  GAG_HV1N5 | P12493
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAG_HV1N5 | P12493: 1gwp 1hiw 1uph 2c55 2x2d 3gv2 4u0a 4u0b 4u0c 4u0d 4u0e 4u0f 4xfx 4xfy 4xfz 4xro 4xrq 5hgl 5hgm 5hgn 5hgp 5irt 5jpa 5l93 5o2u 5upw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HGO)