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(-)Asym./Biol. Unit
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(-) Description

Title :  LLAMA VHH IN COMPLEX WITH P24
 
Authors :  C. Caillat, T. Verrips, W. Weissenhorn
Date :  22 May 17  (Deposition) - 21 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.76
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Vhh Llama Antibody Hiv Capsid Protein Complex, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. R. Gray, J. C. Brookes, C. Caillat, V. Turbe, B. L. Webb, L. A. Granger B. S. Miller, L. E. Mccoy, M. El Khattabi, C. T. Verrips, R. A. Weiss, D. M. Duffy, W. Weissenhorn, R. A. Mckendry
Unravelling The Molecular Basis Of High Affinity Nanobodies Against Hiv P24: In Vitro Functional, Structural And In Silico Insights.
Acs Infect Dis 2017
PubMed-ID: 28591513  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00189

(-) Compounds

Molecule 1 - CAPSID PROTEIN P24
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: THE FOLLOWING REAGENT WAS OBTAINED THROUGH THE NIH AIDS REAGENT PROGRAM, DIVISION OF AIDS, NIAID, NIH: PWISP98-85 FROM DR. WES SUNDQUIST.
 
Molecule 2 - VHH 59H10
    Chains: B, D
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Taxid: 4932
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5O2U)

(-) Sites  (0, 0)

(no "Site" information available for 5O2U)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:198 -A:218
2B:22 -B:92
3C:198 -C:218
4D:22 -D:92

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5O2U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5O2U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5O2U)

(-) Exons   (0, 0)

(no "Exon" information available for 5O2U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 5o2u A 149 SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV 221
                                   158       168       178       188       198       208       218   


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...ee.....eeeeeee..hhhhh.eeeeeee......eeeeeee.....ee.......eeeeee....eeeeee...hhhhheeeeeeee...eee...eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5o2u B   2 VQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQMNRLKPEDTAVYYCFAALDTAYWGQGTQVTVSSAA 115
                                    11        21        31        41        51        61        71        81 |||    88        98|      110     
                                                                                                           82A||              98|              
                                                                                                            82B|              101              
                                                                                                             82C                               


Chain C from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 5o2u C 149 SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV 221
                                   158       168       178       188       198       208       218   


Chain D from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...ee.....eeeeeee..hhhhh.eeeeeee......eeeeeee.....ee.......eeeeee....eeeeee...hhhhheeeeeeee...eee...eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5o2u D   1 DVQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQMNRLKPEDTAVYYCFAALDTAYWGQGTQVTVSSAA 115
                                    10        20        30        40        50        60        70        80  |||   87        97||     109      
                                                                                                            82A||              98|              
                                                                                                             82B|              101              
                                                                                                              82C
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5O2U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5O2U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5O2U)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAG_HV1N5 | P12493: 1gwp 1hiw 1uph 2c55 2x2d 3gv2 4u0a 4u0b 4u0c 4u0d 4u0e 4u0f 4xfx 4xfy 4xfz 4xro 4xrq 5hgl 5hgm 5hgn 5hgo 5hgp 5irt 5jpa 5l93 5upw

(-) Related Entries Specified in the PDB File

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