Chain A from PDB Type:PROTEIN Length:115
aligned with GAG_HV1N5 | P12493 from UniProtKB/Swiss-Prot Length:500
Alignment length:115
16 26 36 46 56 66 76 86 96 106 116
GAG_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD 121
SCOP domains d1hiwa_ A: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwA00 A:7-121 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
1hiw A 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD 121
16 26 36 46 56 66 76 86 96 106 116
Chain A from PDB Type:PROTEIN Length:115
aligned with POL_HV1N5 | P12497 from UniProtKB/Swiss-Prot Length:1435
Alignment length:115
16 26 36 46 56 66 76 86 96 106 116
POL_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD 121
SCOP domains d1hiwa_ A: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwA00 A:7-121 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
1hiw A 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD 121
16 26 36 46 56 66 76 86 96 106 116
Chain B from PDB Type:PROTEIN Length:110
aligned with GAG_HV1N5 | P12493 from UniProtKB/Swiss-Prot Length:500
Alignment length:110
16 26 36 46 56 66 76 86 96 106 116
GAG_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQ 116
SCOP domains d1hiwb_ B: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwB00 B:7-116 [code=1.10.150.90, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------- Transcript
1hiw B 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQ 116
16 26 36 46 56 66 76 86 96 106 116
Chain B from PDB Type:PROTEIN Length:110
aligned with POL_HV1N5 | P12497 from UniProtKB/Swiss-Prot Length:1435
Alignment length:110
16 26 36 46 56 66 76 86 96 106 116
POL_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQ 116
SCOP domains d1hiwb_ B: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwB00 B:7-116 [code=1.10.150.90, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------- Transcript
1hiw B 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQ 116
16 26 36 46 56 66 76 86 96 106 116
Chain C from PDB Type:PROTEIN Length:113
aligned with GAG_HV1N5 | P12493 from UniProtKB/Swiss-Prot Length:500
Alignment length:113
16 26 36 46 56 66 76 86 96 106 116
GAG_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAA 119
SCOP domains d1hiwc_ C: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwC00 C:7-119 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhh............hhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
1hiw C 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAA 119
16 26 36 46 56 66 76 86 96 106 116
Chain C from PDB Type:PROTEIN Length:113
aligned with POL_HV1N5 | P12497 from UniProtKB/Swiss-Prot Length:1435
Alignment length:113
16 26 36 46 56 66 76 86 96 106 116
POL_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAA 119
SCOP domains d1hiwc_ C: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwC00 C:7-119 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhh............hhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
1hiw C 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAA 119
16 26 36 46 56 66 76 86 96 106 116
Chain Q from PDB Type:PROTEIN Length:105
aligned with GAG_HV1N5 | P12493 from UniProtKB/Swiss-Prot Length:500
Alignment length:105
16 26 36 46 56 66 76 86 96 106
GAG_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKS 111
SCOP domains d1hiwq_ Q: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwQ00 Q:7-111 [code=1.10.150.90, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhh............hhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------- Transcript
1hiw Q 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKS 111
16 26 36 46 56 66 76 86 96 106
Chain Q from PDB Type:PROTEIN Length:105
aligned with POL_HV1N5 | P12497 from UniProtKB/Swiss-Prot Length:1435
Alignment length:105
16 26 36 46 56 66 76 86 96 106
POL_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKS 111
SCOP domains d1hiwq_ Q: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwQ00 Q:7-111 [code=1.10.150.90, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhh............hhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------- Transcript
1hiw Q 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKS 111
16 26 36 46 56 66 76 86 96 106
Chain R from PDB Type:PROTEIN Length:112
aligned with GAG_HV1N5 | P12493 from UniProtKB/Swiss-Prot Length:500
Alignment length:112
16 26 36 46 56 66 76 86 96 106 116
GAG_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQA 118
SCOP domains d1hiwr_ R: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwR00 R:7-118 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhh.hhh....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
1hiw R 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQA 118
16 26 36 46 56 66 76 86 96 106 116
Chain R from PDB Type:PROTEIN Length:112
aligned with POL_HV1N5 | P12497 from UniProtKB/Swiss-Prot Length:1435
Alignment length:112
16 26 36 46 56 66 76 86 96 106 116
POL_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQA 118
SCOP domains d1hiwr_ R: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwR00 R:7-118 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhhh...hhhhh.hhhhhhhhhhh.hhh....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
1hiw R 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQA 118
16 26 36 46 56 66 76 86 96 106 116
Chain S from PDB Type:PROTEIN Length:103
aligned with GAG_HV1N5 | P12493 from UniProtKB/Swiss-Prot Length:500
Alignment length:103
16 26 36 46 56 66 76 86 96 106
GAG_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQN 109
SCOP domains d1hiws_ S: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwS00 S:7-109 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhh....hhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------- Transcript
1hiw S 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQN 109
16 26 36 46 56 66 76 86 96 106
Chain S from PDB Type:PROTEIN Length:103
aligned with POL_HV1N5 | P12497 from UniProtKB/Swiss-Prot Length:1435
Alignment length:103
16 26 36 46 56 66 76 86 96 106
POL_HV1N5 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQN 109
SCOP domains d1hiws_ S: HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) SCOP domains
CATH domains 1hiwS00 S:7-109 [code=1.10.150.90, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh............hhhhhhhhhhhhh....hhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------- Transcript
1hiw S 7 VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQN 109
16 26 36 46 56 66 76 86 96 106
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |