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(-) Description

Title :  HEXAMERIC HIV-1 CA IN COMPLEX WITH CPSF6 PEPTIDE, P6 CRYSTAL FORM
 
Authors :  A. J. Price, D. A. Jacques, L. C. James
Date :  11 Jul 14  (Deposition) - 12 Nov 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (6x)
Keywords :  Capsid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Price, D. A. Jacques, W. A. Mcewan, A. J. Fletcher, S. Essig, J. W. Chin, U. D. Halambage, C. Aiken, L. C. James
Host Cofactors And Pharmacologic Ligands Share An Essential Interface In Hiv-1 Capsid That Is Lost Upon Disassembly.
Plos Pathog. V. 10 04459 2014
PubMed-ID: 25356722  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004459

(-) Compounds

Molecule 1 - CAPSID PROTEIN P24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GAG
    Mutation: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B
    Organism Taxid: 11698
    Strain: ISOLATE NY5
    Synonym: PR55GAG
 
Molecule 2 - CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 313-327
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 68 KDA SUBUNIT,CPSF 68 KDA SUBUNIT,PRE-MRNA CLEAVAGE FACTOR IM 68 KDA SUBUNIT,PROTEIN HPBRII-4/7
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (6x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:61 , GLN A:63 , ARG A:173binding site for residue CL A 301

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:14 -A:45
2A:198 -A:218

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U0A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U0A)

(-) Exons   (0, 0)

(no "Exon" information available for 4U0A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0a A   1 PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASTETLLVQNANPDCKTILKALGPGATLEEMMTACQG 220
                                    10        20        30        40        50        60        70        80     || 95       105       115       125       135       145       155       165       175  ||   192       202       212        
                                                                                                                86|                                                                                   178|                                  
                                                                                                                 92                                                                                    186                                  


Chain B from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4u0a B 313 PVLFPGQPFGQPPL 326
                                   322
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U0A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U0A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U0A)

(-) Gene Ontology  (32, 35)

Asymmetric Unit(hide GO term definitions)

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  4u0a
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  CPSF6_HUMAN | Q16630
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  GAG_HV1N5 | P12493
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CPSF6_HUMAN | Q16630: 3p5t 3p6y 3q2s 3q2t 4b4n 4u0b 4wym
        GAG_HV1N5 | P12493: 1gwp 1hiw 1uph 2c55 2x2d 3gv2 4u0b 4u0c 4u0d 4u0e 4u0f 4xfx 4xfy 4xfz 4xro 4xrq 5hgl 5hgm 5hgn 5hgo 5hgp 5irt 5jpa 5l93 5o2u 5upw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4U0A)