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(-) Description

Title :  CRYSTAL STRUCTURE OF XIAP BIR1 DOMAIN
 
Authors :  M. Milani, F. Cossu, E. Mastrangelo
Date :  03 Feb 14  (Deposition) - 11 Feb 15  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Xiap, Bir, Zn Finger (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Cossu, M. Milani, S. Grassi, F. Malvezzi, A. Corti, M. Bolognesi, E. Mastrangelo
Nf023 Binding To Xiap-Bir1: Searching Drugs For Regulation Of The Nf-Kappa B Pathway.
Proteins V. 83 612 2015
PubMed-ID: 25619915  |  Reference-DOI: 10.1002/PROT.24766

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE XIAP
    Chains: A, B, C, D
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: BIR1 DOMAIN (UNP RESIDUES 10-99)
    Gene: API3,BIRC4,IAP3,XIAP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4, IAP-LIKE PROTEIN, HILP, INHIBITOR OF APOPTOSIS PROTEIN 3, HIAP3, X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:63 , CYS A:66 , HIS A:83 , CYS A:90binding site for residue ZN
2AC2SOFTWARECYS B:63 , CYS B:66 , HIS B:83 , CYS B:90binding site for residue ZN
3AC3SOFTWARECYS C:63 , CYS C:66 , HIS C:83 , CYS C:90binding site for residue ZN
4AC4SOFTWARECYS D:63 , CYS D:66 , HIS D:83 , CYS D:90binding site for residue ZN

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OXC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OXC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OXC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OXC)

(-) Exons   (0, 0)

(no "Exon" information available for 4OXC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
                                                                                                             
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhh...........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  4oxc A 22 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYLE 99
                                    31        41        51        61        71        81        91        


Chain B from PDB  Type:PROTEIN  Length:77
                                                                                                            
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  4oxc B 22 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYL 98
                                    31        41        51        61        71        81        91       


Chain C from PDB  Type:PROTEIN  Length:78
                                                                                                             
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhh..........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  4oxc C 22 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYLE 99
                                    31        41        51        61        71        81        91        


Chain D from PDB  Type:PROTEIN  Length:77
                                                                                                            
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..........hhhhhhhh.eeeeee..eeee.....ee.......hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  4oxc D 22 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYL 98
                                    31        41        51        61        71        81        91
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OXC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OXC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OXC)

(-) Gene Ontology  (32, 32)

Asymmetric Unit(hide GO term definitions)

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  XIAP_HUMAN | P98170
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XIAP_HUMAN | P98170: 1c9q 1f9x 1g3f 1g73 1i3o 1i4o 1i51 1kmc 1nw9 1tfq 1tft 2ecg 2jk7 2kna 2opy 2opz 2poi 2pop 2qra 2vsl 3clx 3cm2 3cm7 3eyl 3g76 3hl5 3uw4 3uw5 4ec4 4hy0 4ic2 4ic3 4j3y 4j44 4j45 4j46 4j47 4j48 4kju 4kjv 4kmp 4mtz 4wvs 4wvt 4wvu 5c0k 5c0l 5c3h 5c3k 5c7a 5c7b 5c7c 5c7d 5c83 5c84 5m6e 5m6f 5m6h 5m6l 5m6m

(-) Related Entries Specified in the PDB File

4mtz 4MTZ CONTAINS THE SAME PROTEIN COMPLEXED WITH NF023