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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CASPASE-7 / XIAP-BIR2 COMPLEX
 
Authors :  S. J. Riedl, G. S. Salvesen, W. Bode
Date :  14 Dec 01  (Deposition) - 16 Jan 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Complex, Iap, Caspase, Apoptosis, Bir, Apoptosis/Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. J. Riedl, G. S. Salvesen, W. Bode
Crystal Structure Of The Caspase-7 / Xiap-Bir2 Complex
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CASPASE-7
    ChainsA, B
    EC Number3.4.22.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL21 DE3
    Expression System Taxid469008
    Expression System Vector TypePET23
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - X-LINKED INHIBITOR OF APOPTOSIS PROTEIN
    ChainsC, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL21 DE3
    Expression System Taxid469008
    Expression System Vector TypePGEX4T1
    FragmentXIAP-BIR2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymXIAP

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1KMC)

(-) Sites  (0, 0)

(no "Site" information available for 1KMC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KMC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KMC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric/Biological Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_048618D255ECASP7_HUMANPolymorphism2227310A/BD363E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 8)

Asymmetric/Biological Unit (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP7_HUMAN66-190
 
  2A:162-289
B:162-289
2CASPASE_HISPS01121 Caspase family histidine active site.CASP7_HUMAN131-145
 
  2A:224-238
B:224-238
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP7_HUMAN177-188
 
  2A:276-287
B:276-287
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP7_HUMAN209-303
 
  2A:318-402
B:318-401

(-) Exons   (6, 12)

Asymmetric/Biological Unit (6, 12)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2cENST000003693182cENSE00001832746chr10:115439636-115439737102CASP7_HUMAN-00--
1.4bENST000003693184bENSE00001749353chr10:115457253-115457362110CASP7_HUMAN1-37370--
1.6bENST000003693186bENSE00001096780chr10:115480791-115480927137CASP7_HUMAN37-83472A:150-175C (gaps)
B:149-175C (gaps)
31
32
1.7dENST000003693187dENSE00001096775chr10:115481410-115481538129CASP7_HUMAN83-126442A:175C-218
B:175C-218
44
44
1.8cENST000003693188cENSE00001096779chr10:115485121-115485296176CASP7_HUMAN126-184592A:218-283 (gaps)
B:218-283 (gaps)
66
66
1.10bENST0000036931810bENSE00001656181chr10:115486064-115486193130CASP7_HUMAN185-228442A:284-336 (gaps)
B:284-336 (gaps)
53
53
1.11cENST0000036931811cENSE00001591443chr10:115489070-1154906621593CASP7_HUMAN228-303762A:336-402 (gaps)
B:336-401 (gaps)
86
85

2.2aENST000003711992aENSE00001810722X:122993877-122994143267XIAP_HUMAN-00--
2.3cENST000003711993cENSE00002176074X:123019481-123020389909XIAP_HUMAN1-2932932C:134-150
D:134-150
17
17
2.4bENST000003711994bENSE00001649641X:123022469-123022568100XIAP_HUMAN293-326340--
2.5bENST000003711995bENSE00001630752X:123025088-12302516679XIAP_HUMAN326-352270--
2.6ENST000003711996ENSE00001714518X:123026581-12302662343XIAP_HUMAN353-367150--
2.7bENST000003711997bENSE00001653318X:123034343-123034543201XIAP_HUMAN367-434680--
2.8eENST000003711998eENSE00001454620X:123040838-1230478296992XIAP_HUMAN434-497640--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with CASP7_HUMAN | P55210 from UniProtKB/Swiss-Prot  Length:303

    Alignment length:247
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       
         CASP7_HUMAN     57 TYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYFSQ  303
               SCOP domains d1kmca_ A: Caspase-7                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1kmcA00 A:150-402  [code=3.40.50.1460, no name defined]                                                                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee....hhhhh.....hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhh.......eeeeee..ee..eeee..eeeehhhhhhh.....hhhhh...eeeeee...eee......-------------.........eeeee....ee...ee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhh......eeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ---------CASPASE_P20  PDB: A:162-289 UniProt: 66-190                                                                                  ------------------CASPASE_P10  PDB: A:318-402 UniProt: 209-303                                                    PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.6b UniProt: 37-83   ------------------------------------------Exon 1.8c  PDB: A:218-283 (gaps) UniProt: 126-184          Exon 1.10b  PDB: A:284-336 (gaps)           --------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------Exon 1.7d  PDB: A:175C-218 UniProt: 83-126  -----------------------------------------------------------------------------------------------------Exon 1.11c  PDB: A:336-402 (gaps) UniProt: 228-303                           Transcript 1 (2)
                1kmc A  150 TYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQAARGTELDDGIQ-------------RYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYFSQ  402
                                   162|      171    |||178       188       198       208       218   ||  229       239       255       265       275       285       295         -   |   324       334       344       354       364       374     |381B|||||||384     ||395       
                                156A| |          175A||                                            222|                    247|                                      295           318                                                          379A  |||||391I|     390|          
                                  161 |           175B|                                             224                     254                                                                                                                    381A||||||382      392          
                                   162A            175C                                                                                                                                                                                             381B||||||                     
                                                                                                                                                                                                                                                     381C|||||                     
                                                                                                                                                                                                                                                      381D||||                     
                                                                                                                                                                                                                                                       381E|||                     
                                                                                                                                                                                                                                                        381F||                     
                                                                                                                                                                                                                                                         381G|                     
                                                                                                                                                                                                                                                          381H                     

Chain B from PDB  Type:PROTEIN  Length:234
 aligned with CASP7_HUMAN | P55210 from UniProtKB/Swiss-Prot  Length:303

    Alignment length:247
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       
         CASP7_HUMAN     56 PTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYFS  302
               SCOP domains d1kmcb_ B: Caspase-7                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1kmcB00 B:149-401  [code=3.40.50.1460, no name defined]                                                                                                                                                                                                 CATH domains
           Pfam domains (1) ------------Peptidase_C14-1kmcB01 B:163-400                                                                                                                                                                                                           - Pfam domains (1)
           Pfam domains (2) ------------Peptidase_C14-1kmcB02 B:163-400                                                                                                                                                                                                           - Pfam domains (2)
         Sec.struct. author .............eeeeee....hhhhh.....hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhh.......eeeeee..ee..eeee..eeeehhhhhhh.....hhhhh...eeeeee...eee......-------------.........eeeee....ee...ee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhh......eeee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E----------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------CASPASE_P20  PDB: B:162-289 UniProt: 66-190                                                                                  ------------------CASPASE_P10  PDB: B:318-401 UniProt: 209-303                                                   PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.6b UniProt: 37-83    ------------------------------------------Exon 1.8c  PDB: B:218-283 (gaps) UniProt: 126-184          Exon 1.10b  PDB: B:284-336 (gaps)           -------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.7d  PDB: B:175C-218 UniProt: 83-126  -----------------------------------------------------------------------------------------------------Exon 1.11c  PDB: B:336-401 (gaps) UniProt: 228-303                          Transcript 1 (2)
                1kmc B  149 PTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQAARGTELDDGIQ-------------RYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYFS  401
                                   161 |     170     ||177       187       197       207       217    || 228       238       254       264       274       284       294|        -    |  323       333       343       353       363       373      381A|||||||383      |394       
                                 156A| |          175A||                                            222|                    247|                                      295           318                                                          379A  |||||391I|     390|         
                                   161 |           175B|                                             224                     254                                                                                                                    381A||||||382      392         
                                    162A            175C                                                                                                                                                                                             381B||||||                    
                                                                                                                                                                                                                                                      381C|||||                    
                                                                                                                                                                                                                                                       381D||||                    
                                                                                                                                                                                                                                                        381E|||                    
                                                                                                                                                                                                                                                         381F||                    
                                                                                                                                                                                                                                                          381G|                    
                                                                                                                                                                                                                                                           381H                    

Chain C from PDB  Type:PROTEIN  Length:17
 aligned with XIAP_HUMAN | P98170 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:17
                                   143       
          XIAP_HUMAN    134 ETHADYLLRTGQVVDIS  150
               SCOP domains d1kmcc_ C:        SCOP domains
               CATH domains 1kmcC00 C:134-150 CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
               Transcript 2 Exon 2.3c         Transcript 2
                1kmc C  134 ETHADYLLRTGQVVDIS  150
                                   143       

Chain D from PDB  Type:PROTEIN  Length:17
 aligned with XIAP_HUMAN | P98170 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:17
                                   143       
          XIAP_HUMAN    134 ETHADYLLRTGQVVDIS  150
               SCOP domains d1kmcd_ D:        SCOP domains
               CATH domains 1kmcD00 D:134-150 CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
               Transcript 2 Exon 2.3c         Transcript 2
                1kmc D  134 ETHADYLLRTGQVVDIS  150
                                   143       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Peptides (792)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit

(-) Gene Ontology  (41, 47)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (CASP7_HUMAN | P55210)
molecular function
    GO:0004197    cysteine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0097200    cysteine-type endopeptidase activity involved in execution phase of apoptosis    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the execution phase of apoptosis.
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0008635    activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c    Any process that initiates the activity of the inactive enzyme cysteine-type endopeptidase in the context of an apoptotic process and is mediated by cytochrome c.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0006921    cellular component disassembly involved in execution phase of apoptosis    The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis.
    GO:0097194    execution phase of apoptosis    A stage of the apoptotic process that starts with the controlled breakdown of the cell through the action of effector caspases or other effector molecules (e.g. cathepsins, calpains etc.). Key steps of the execution phase are rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D   (XIAP_HUMAN | P98170)
molecular function
    GO:0004869    cysteine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0043027    cysteine-type endopeptidase inhibitor activity involved in apoptotic process    Stops, prevents or reduces the activity of a cysteine-type endopeptidase involved in the apoptotic process.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030414    peptidase inhibitor activity    Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0061630    ubiquitin protein ligase activity    Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0055070    copper ion homeostasis    Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
    GO:1990001    inhibition of cysteine-type endopeptidase activity involved in apoptotic process    Any process that prevents the activation of an inactive cysteine-type endopeptidase involved in an apoptotic process.
    GO:0090307    mitotic spindle assembly    The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0043154    negative regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
    GO:0010466    negative regulation of peptidase activity    Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
    GO:0090263    positive regulation of canonical Wnt signaling pathway    Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
    GO:1902530    positive regulation of protein linear polyubiquitination    Any process that activates or increases the frequency, rate or extent of protein linear polyubiquitination.
    GO:0031398    positive regulation of protein ubiquitination    Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0030510    regulation of BMP signaling pathway    Any process that modulates the frequency, rate or extent of the activity of any BMP receptor signaling pathway.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0050727    regulation of inflammatory response    Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents.
    GO:0045088    regulation of innate immune response    Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
    GO:0070424    regulation of nucleotide-binding oligomerization domain containing signaling pathway    Any process that modulates the frequency, rate, or extent of a nucleotide-binding oligomerization domain containing (NOD) pathway.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005876    spindle microtubule    Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP7_HUMAN | P552101f1j 1gqf 1i4o 1i51 1k86 1k88 1mia 1shj 1shl 2ql5 2ql7 2ql9 2qlb 2qlf 2qlj 3edr 3h1p 3ibc 3ibf 3r5k 4fdl 4fea 4hq0 4hqr 4jb8 4jj8 4jr1 4jr2 4lsz 4zvo 4zvp 4zvq 4zvr 4zvs 4zvt 4zvu 5ic6 5k20
        XIAP_HUMAN | P981701c9q 1f9x 1g3f 1g73 1i3o 1i4o 1i51 1nw9 1tfq 1tft 2ecg 2jk7 2kna 2opy 2opz 2poi 2pop 2qra 2vsl 3clx 3cm2 3cm7 3eyl 3g76 3hl5 3uw4 3uw5 4ec4 4hy0 4ic2 4ic3 4j3y 4j44 4j45 4j46 4j47 4j48 4kju 4kjv 4kmp 4mtz 4oxc 4wvs 4wvt 4wvu 5c0k 5c0l 5c3h 5c3k 5c7a 5c7b 5c7c 5c7d 5c83 5c84 5m6e 5m6f 5m6h 5m6l 5m6m

(-) Related Entries Specified in the PDB File

1i3o 1I3O IS THE CRYSTAL STRUCTURE OF THE COMPLEX OF XIAP-BIR2 AND CASPASE 3.
1i4o 1I4O IS THE CRYSTAL STRUCTURE OF THE XIAP/CASPASE-7 COMPLEX.
1i51 1I51 IS THE CRYSTAL STRUCTURE OF CASPASE-7 COMPLEXED WITH XIAP.