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(-) Description

Title :  FRAGMENT-BASED DRUG DISCOVERY TARGETING INHIBITOR OF APOPTOSIS PROTEINS: COMPOUND 21
 
Authors :  G. Chessari, I. M. Buck, J. E. H. Day, P. J. Day, A. Iqbal, C. N. Johnson, E. V. Martins, D. Miller, M. Reader, D. C. Rees, S. J. Rich, E. Tamanini, M. G. A. Ward, P. A. Williams, G. Williams, N. E. Wilsher, A. J. -A. Woolfor
Date :  25 Jun 15  (Deposition) - 12 Aug 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A
Keywords :  Ligase, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Chessari, I. M. Buck, J. E. Day, P. J. Day, A. Iqbal, C. N. Johnson, E. J. Lewis, V. Martins, D. Miller, M. Reader, D. C. Rees, S. J. Rich, E. Tamanini, M. Vitorino, G. A. Ward, P. A. Williams, G. Williams, N. E. Wilsher, A. J. Woolford
Fragment-Based Drug Discovery Targeting Inhibitor Of Apoptosis Proteins: Discovery Of A Non-Alanine Lead Series With Dual Activity Against Ciap1 And Xiap.
J. Med. Chem. V. 58 6574 2015
PubMed-ID: 26218264  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00706

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE XIAP
    ChainsA
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET 28B
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 249-354
    GeneXIAP, API3, BIRC4, IAP3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4,IAP-LIKE PROTEIN,HILP,INHIBITOR OF APOPTOSIS PROTEIN 3,HIAP3,X-LINKED INHIBITOR OF APOPTOSIS PROTEIN,X-LINKED IAP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
14YN1Ligand/Ion(2R,5R)-4-[2-(6-BENZYL-3,3-DIMETHYL-2,3-DIHYDRO-1H-PYRROLO[3,2-C]PYRIDIN-1-YL)-2-OXOETHYL]-5-(METHOXYMETHYL)-2-METHYLPIPERAZIN-1-IUM
2ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:300 , CYS A:303 , HIS A:320 , CYS A:327binding site for residue ZN A 401
2AC2SOFTWARELEU A:292 , LYS A:297 , VAL A:298 , GLY A:306 , LEU A:307 , THR A:308 , ASP A:309 , TRP A:310 , LYS A:311 , GLU A:314 , GLN A:319 , TRP A:323 , TYR A:324 , HOH A:580binding site for residue 4YN A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C83)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C83)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C83)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5C83)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5c83 A 248 MNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVR 354
                                   257       267       277       287       297       307       317       327       337       347       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C83)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C83)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C83)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XIAP_HUMAN | P981701c9q 1f9x 1g3f 1g73 1i3o 1i4o 1i51 1kmc 1nw9 1tfq 1tft 2ecg 2jk7 2kna 2opy 2opz 2poi 2pop 2qra 2vsl 3clx 3cm2 3cm7 3eyl 3g76 3hl5 3uw4 3uw5 4ec4 4hy0 4ic2 4ic3 4j3y 4j44 4j45 4j46 4j47 4j48 4kju 4kjv 4kmp 4mtz 4oxc 4wvs 4wvt 4wvu 5c0k 5c0l 5c3h 5c3k 5c7a 5c7b 5c7c 5c7d 5c84 5m6e 5m6f 5m6h 5m6l 5m6m

(-) Related Entries Specified in the PDB File

5c0k 5c0l 5c3c 5c3h 5c3k 5c7a 5c7b 5c7d