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(-) Description

Title :  STRUCTURE OF XIAP-BIR1 IN COMPLEX WITH NF023
 
Authors :  F. Cossu, M. Milani, S. Grassi, E. Mastrangelo, M. Bolognesi
Date :  20 Sep 13  (Deposition) - 24 Sep 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Bir Domain, Anti-Apoptotic, Tab1, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Cossu, M. Milani, S. Grassi, F. Malvezzi, A. Corti, M. Bolognesi, E. Mastrangelo
Protein-Protein Interactions In Nfkb Pathway: Novel Tools T Promote Apoptosis In Cancer Therapy
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE XIAP
    Chains: A, B, C, D
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 10-99
    Gene: XIAP, API3, BIRC4, IAP3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4, IAP-LIKE PROTEIN, ILP, HILP, INHIBITOR OF APOPTOSIS PROTEIN 3, IAP-3, HIAP-3, HIAP3, X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
10BU2Ligand/Ion8-({3-[({3-[(4,6,8-TRISULFONAPHTHALEN-1-YL)CARBAMOYL]PHENYL}CARBAMOYL)AMINO]BENZOYL}AMINO)NAPHTHALENE-1,3,5-TRISULFONIC ACID
2SO41Ligand/IonSULFATE ION
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
10BU1Ligand/Ion8-({3-[({3-[(4,6,8-TRISULFONAPHTHALEN-1-YL)CARBAMOYL]PHENYL}CARBAMOYL)AMINO]BENZOYL}AMINO)NAPHTHALENE-1,3,5-TRISULFONIC ACID
2SO4-1Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
10BU1Ligand/Ion8-({3-[({3-[(4,6,8-TRISULFONAPHTHALEN-1-YL)CARBAMOYL]PHENYL}CARBAMOYL)AMINO]BENZOYL}AMINO)NAPHTHALENE-1,3,5-TRISULFONIC ACID
2SO41Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:63 , CYS A:66 , HIS A:83 , CYS A:90BINDING SITE FOR RESIDUE ZN A 200
2AC2SOFTWARECYS B:1063 , CYS B:1066 , HIS B:1083 , CYS B:1090BINDING SITE FOR RESIDUE ZN B 1101
3AC3SOFTWAREALA B:1069 , ASP B:1071 , HOH B:1205 , ARG D:3082 , VAL D:3086BINDING SITE FOR RESIDUE SO4 B 1102
4AC4SOFTWARECYS C:3063 , CYS C:3066 , HIS C:3083 , CYS C:3090BINDING SITE FOR RESIDUE ZN C 3101
5AC5SOFTWAREARG A:62 , CYS A:66 , HIS A:67 , SER A:87 , PRO A:88 , ASN A:89 , ARG C:3062 , CYS C:3066 , HIS C:3067 , SER C:3087 , PRO C:3088 , ASN C:3089 , HOH C:3219 , HOH C:3222 , HOH C:3226BINDING SITE FOR RESIDUE 0BU C 3102
6AC6SOFTWARECYS D:3063 , CYS D:3066 , HIS D:3083 , CYS D:3090BINDING SITE FOR RESIDUE ZN D 3101
7AC7SOFTWAREARG B:1062 , CYS B:1066 , HIS B:1067 , SER B:1087 , PRO B:1088 , ASN B:1089 , HOH B:1217 , ARG D:3062 , CYS D:3066 , HIS D:3067 , SER D:3087 , PRO D:3088 , ASN D:3089 , HOH D:3222 , HOH D:3228 , HOH D:3234BINDING SITE FOR RESIDUE 0BU D 3102

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:66 -A:90

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MTZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MTZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MTZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4MTZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhh........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                4mtz A   21 EEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYL   98
                                    30        40        50        60        70        80        90        


Chain B from PDB  Type:PROTEIN  Length:77
                                                                                                              
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                4mtz B 1022 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYL 1098
                                  1031      1041      1051      1061      1071      1081      1091       


Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                              
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                4mtz C 3022 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYL 3098
                                  3031      3041      3051      3061      3071      3081      3091       


Chain D from PDB  Type:PROTEIN  Length:77
                                                                                                              
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..........hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                4mtz D 3022 EFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFYL 3098
                                  3031      3041      3051      3061      3071      3081      3091
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MTZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MTZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MTZ)

(-) Gene Ontology  (32, 32)

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  XIAP_HUMAN | P98170
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  6.3.2.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XIAP_HUMAN | P98170: 1c9q 1f9x 1g3f 1g73 1i3o 1i4o 1i51 1kmc 1nw9 1tfq 1tft 2ecg 2jk7 2kna 2opy 2opz 2poi 2pop 2qra 2vsl 3clx 3cm2 3cm7 3eyl 3g76 3hl5 3uw4 3uw5 4ec4 4hy0 4ic2 4ic3 4j3y 4j44 4j45 4j46 4j47 4j48 4kju 4kjv 4kmp 4oxc 4wvs 4wvt 4wvu 5c0k 5c0l 5c3h 5c3k 5c7a 5c7b 5c7c 5c7d 5c83 5c84 5m6e 5m6f 5m6h 5m6l 5m6m

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