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(-) Description

Title :  FOLDON DOMAIN WILD TYPE C-CONJUGATE
 
Authors :  M. A. Graewert, A. Berthelmann, J. Lach, M. Groll, J. Eichler
Date :  25 Oct 13  (Deposition) - 12 Mar 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Trimeric Scaffold, Chemical Ligation, Folding, Trazido-Functionalized Trimesic Acid Scaffold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Berthelmann, J. Lach, M. A. Grawert, M. Groll, J. Eichler
Versatile C(3)-Symmetric Scaffolds And Their Use For Covalent Stabilization Of The Foldon Trimer.
Org. Biomol. Chem. V. 12 2606 2014
PubMed-ID: 24637609  |  Reference-DOI: 10.1039/C3OB42251H

(-) Compounds

Molecule 1 - FIBRITIN
    Chains: A, B, C
    Engineered: YES
    Fragment: C-TERMINUS FRAGMENT (UNP RESIDUES 458-484)
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN BACTERIOPHAGE T4 FIBRITIN AT ITS C-TERMINUS AND HARBORS AN TRIMESIC ACID C-CONJUGATE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
12KN1Ligand/IonN,N',N''-TRIETHYLBENZENE-1,3,5-TRICARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:26 , LEU A:27 , PHE B:26 , LEU B:27 , HOH B:245 , HOH B:250 , PHE C:26 , LEU C:27BINDING SITE FOR RESIDUE 2KN B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NCW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NCW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NCW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NCW)

(-) Exons   (0, 0)

(no "Exon" information available for 4NCW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:25
                                                        
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ..........eeee..eeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                  4ncw A  3 IPEAPRDGQAYVRKDGEWVLLSTFL 27
                                    12        22     


Chain B from PDB  Type:PROTEIN  Length:24
                                                       
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ........eeeee..eeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  4ncw B  4 PEAPRDGQAYVRKDGEWVLLSTFL 27
                                    13        23    


Chain C from PDB  Type:PROTEIN  Length:24
                                                       
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ........eeeee..eeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  4ncw C  4 PEAPRDGQAYVRKDGEWVLLSTFL 27
                                    13        23
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NCW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NCW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NCW)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D9IEJ2_BPT4 | D9IEJ2: 4ncu 4ncv
        WAC_BPT4 | P10104: 1aa0 1avy 1ox3 1rfo 1v1h 1v1i 2bsg 2ibl 2kbl 3a1m 3j2o 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4ncu 4ncv
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        D9IEJ2_BPT4 | D9IEJ2: 4zyp 5c0r 5c0s

(-) Related Entries Specified in the PDB File

1rfo TRIMERIC FOLDON OF THE T4 PHAGEHEAD FIBRITIN (NMR STRUCTURE)
4ncu FOLDON DOMAIN WILD TYPE (X-RAY)
4ncv