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(-) Description

Title :  CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN COMPLEX WITH INHIBITOR UW1268
 
Authors :  E. A. Merritt, E. T. Larson
Date :  20 Feb 13  (Deposition) - 19 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Serine/Threonine Protein Kinase, Transferase, Calcium-Binding, Atp- Binding, Bumped Kinase Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. S. Vidadala, K. K. Ojo, S. M. Johnson, Z. Zhang, S. E. Leonard, A. Mitra, R. Choi, M. C. Reid, K. R. Keyloun, A. M. Fox, M. Kennedy, T. Silver-Brace, J. C. Hume, S. Kappe, C. L. Verlinde, E. Fan, E. A. Merritt, W. C. Van Voorhis, D. J. Maly
Development Of Potent And Selective Plasmodium Falciparum Calcium-Dependent Protein Kinase 4 (Pfcdpk4) Inhibitors Tha Block The Transmission Of Malaria To Mosquitoes.
Eur. J. Med. Chem. V. 74 562 2014
PubMed-ID: 24531197  |  Reference-DOI: 10.1016/J.EJMECH.2013.12.048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALMODULIN-DOMAIN PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AAG53993, CDPK1, TGGT1_059880, TGVEG_042030
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 5811
    Synonym: CALMODULIN-DOMAIN PROTEIN KINASE, PUTATIVE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1V681Ligand/Ion1-[(1-METHYLPIPERIDIN-4-YL)METHYL]-3-[6-(2-METHYLPROPOXY)NAPHTHALEN-2-YL]PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:58 , LYS A:59 , VAL A:65 , ALA A:78 , LYS A:80 , LEU A:103 , MET A:112 , LEU A:126 , GLU A:129 , VAL A:130 , TYR A:131 , GLU A:135 , LEU A:181 , ILE A:194 , ASP A:195 , PHE A:196 , HOH A:715 , HOH A:717BINDING SITE FOR RESIDUE V68 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JBV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JBV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JBV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JBV)

(-) Exons   (0, 0)

(no "Exon" information available for 4JBV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeeeeeeeee..eeeeeeee.....eeeeeeee........hhhhhhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee...hhhhhh....hhhhhh......hhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhh..hhhhhhhhhhhhh.....eehhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jbv A  45 AIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKDVPSLDNAILNIRQFQGTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLCGN 507
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499        
                                                                                                                                                                                                                                                                                                      313|                                                                                                                                                                                            
                                                                                                                                                                                                                                                                                                       319
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JBV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JBV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JBV)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9BJF5_TOXGO | Q9BJF5: 3hx4 3i79 3i7b 3i7c 3ku2 3ma6 3n51 3nyv 3sx9 3sxf 3t3u 3t3v 3upx 3upz 3v51 3v5p 3v5t 4ieb 4ifg 4ih8 4ihp 4m84 4ona 4tzr 4wg3 4wg4 4wg5 4yga 4yjn 5dvr 5jms 5jn2 5t6a 5t6i 5t6k

(-) Related Entries Specified in the PDB File

3sx9 3sxf 3t3v 3upx 3upz 3v51