3HX4 - JenaLib

Title :   CRYSTAL STRUCTURE OF CDPK1 OF TOXOPLASMA GONDII, TGME49_101440, IN PRESENCE OF CALCIUM

Authors :   A. K. Wernimont, J. D. Artz, P. Finnerty, T. Xiao, H. He, F. Mackenzie, G. Sinestera, A. A. Hassani, G. Wasney, M. Vedadi, S. Lourido, A. Bochk C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, D. L. Sibley, R Y. H. Lin, Structural Genomics Consortium (Sgc)

Date :   19 Jun 09 (Deposition) - 21 Jul 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A

Keywords :   Cdpks, Toxoplasma, Kinase, Protist, Structural Genomics, Structural Genomics Consortium, Sgc, Atp-Binding, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Wernimont, J. D. Artz, P. Finerty, Y. H. Lin, M. Amani, A. Allali-Hassani, G. Senisterra, M. Vedadi, W. Tempel, F. Mackenzie I. Chau, S. Lourido, L. D. Sibley, R. Hui
Structures Of Apicomplexan Calcium-Dependent Protein Kinase Reveal Mechanism Of Activation By Calcium.
Nat. Struct. Mol. Biol. V. 17 596 2010
PubMed-ID: 20436473 | Reference-DOI: 10.1038/NSMB.1795

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:415 , ASP A:417 , ASN A:419 , TYR A:421 , GLU A:423 , GLU A:426	BINDING SITE FOR RESIDUE CA A 601
02	AC2	SOFTWARE	ASP A:368 , ASN A:370 , ASP A:372 , GLN A:374 , GLU A:379 , HOH A:508	BINDING SITE FOR RESIDUE CA A 602
03	AC3	SOFTWARE	ASP A:451 , ASP A:453 , SER A:455 , LYS A:457 , GLU A:462 , HOH A:587	BINDING SITE FOR RESIDUE CA A 603
04	AC4	SOFTWARE	ASP A:485 , ASN A:487 , ASP A:489 , GLU A:491 , GLU A:496 , HOH A:588	BINDING SITE FOR RESIDUE CA A 604
05	AC5	SOFTWARE	LEU A:57 , GLU A:64 , VAL A:65 , ALA A:78 , LYS A:80 , GLU A:129 , TYR A:131 , GLU A:135 , LEU A:181 , ASP A:195 , HOH A:528 , HOH A:529 , GOL A:611 , HOH A:700	BINDING SITE FOR RESIDUE ANP A 605
06	AC6	SOFTWARE	ARG A:173 , MET A:208 , LYS A:209 , ASP A:210 , TYR A:227 , HOH A:523 , HOH A:670	BINDING SITE FOR RESIDUE SO4 A 606
07	AC7	SOFTWARE	LYS A:176 , HOH A:537 , HOH A:651	BINDING SITE FOR RESIDUE SO4 A 607
08	AC8	SOFTWARE	LYS A:266 , ASP A:473 , SER A:474	BINDING SITE FOR RESIDUE SO4 A 608
09	AC9	SOFTWARE	HIS A:33 , TYR A:256 , LYS A:260 , LYS A:338 , HOH A:512	BINDING SITE FOR RESIDUE SO4 A 609
10	BC1	SOFTWARE	THR A:132 , SER A:184 , LYS A:185	BINDING SITE FOR RESIDUE SO4 A 610
11	BC2	SOFTWARE	LEU A:57 , GLY A:58 , LYS A:59 , GLY A:60 , SER A:61 , PHE A:62 , GLY A:63 , GLU A:64 , VAL A:65 , ANP A:605	BINDING SITE FOR RESIDUE GOL A 611
12	BC3	SOFTWARE	GLU A:279 , SER A:280 , SER A:294 , HOH A:517	BINDING SITE FOR RESIDUE GOL A 612

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:467
 aligned with Q9BJF5_TOXGO | Q9BJF5 from UniProtKB/TrEMBL  Length:507

    Alignment length:474
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499    
         Q9BJF5_TOXGO    30 DHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 503
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhh.....hhhh.eeeeee........eeeeee.....eeeeeeee.-------hhhhhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee........eee......ee.................hhhhhhh...hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh............hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....eehhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh.....hhhhhhhhhhhhh......eehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hx4 A  30 DHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISK-------DKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 503
                                    39        49        59        69        79    |    -  |     99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499    
                                                                                 84      92

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q9BJF5_TOXGO | Q9BJF5)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.

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	Cis Peptide Bonds
		Leu A:271 - Pro A:272	[ RasMol ]

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