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(-) Description

Title :  CRYSTAL STRUCTURE OF KINASE DOMAIN OF TGCDPK1 IN PRESENCE OF 3BRB-PP1
 
Authors :  A. K. Wernimont, W. Qiu, M. Amani, J. D. Artz, A. A. Hassani, G. Senisterr M. Vedadi, L. D. Sibley, S. Lourido, K. Shokat, C. Zhang, C. H. Arrowsmi A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, R. Hui, Y. H. Lin, S Genomics Consortium (Sgc)
Date :  23 Mar 10  (Deposition) - 21 Jul 10  (Release) - 21 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cdpk, Parasitology, Atp-Binding, Kinase, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Transferase, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, W. Qiu, M. Amani, J. D. Artz, A. A. Hassani, G. Senisterra, M. Vedadi, L. D. Sibley, S. Lourido, K. Shokat, C. Zhang C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, R. Hui, Y. H. Lin
Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence O 3Brb-Pp1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CALMODULIN-DOMAIN PROTEIN KINASE 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15MLH
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CDPK1, TGME49_101440
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 5811

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1DXR2Ligand/Ion3-(3-BROMOBENZYL)-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1DXR1Ligand/Ion3-(3-BROMOBENZYL)-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1DXR1Ligand/Ion3-(3-BROMOBENZYL)-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:42 , VAL A:48 , MET A:95 , GLU A:112 , VAL A:113 , TYR A:114BINDING SITE FOR RESIDUE DXR A 299
2AC2SOFTWARELEU B:40 , GLY B:41 , LYS B:42 , VAL B:48 , ALA B:61 , LYS B:63 , MET B:95 , LEU B:109 , GLU B:112 , TYR B:114 , LEU B:164 , ILE B:177BINDING SITE FOR RESIDUE DXR B 299

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:230 -B:230

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MA6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MA6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MA6)

(-) Exons   (0, 0)

(no "Exon" information available for 3MA6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
 aligned with Q9BJF5_TOXGO | Q9BJF5 from UniProtKB/TrEMBL  Length:507

    Alignment length:268
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305        
         Q9BJF5_TOXGO    46 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTK 313
               SCOP domains d3ma6a_ A: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee....eeeeeee.....eeeeee..........hhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee...hhhhhh.-.....hhhhhhh..hhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ma6 A  29 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE-SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTK 296
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288        
                                                                                                                                                                                       186 |                                                                                                            
                                                                                                                                                                                         188                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:266
 aligned with Q9BJF5_TOXGO | Q9BJF5 from UniProtKB/TrEMBL  Length:507

    Alignment length:267
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       
         Q9BJF5_TOXGO    46 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT 312
               SCOP domains d3ma6b_ B: automated matches                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Pkinase-3ma6B01 B:34-291                                                                                                                                                                                                                                          ---- Pfam domains (1)
           Pfam domains (2) -----Pkinase-3ma6B02 B:34-291                                                                                                                                                                                                                                          ---- Pfam domains (2)
         Sec.struct. author hhhhheeeeeeeee...eeeeeeee.....eeeeeeee......-...hhhhhhhhhh..........eeeeee...eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh............eee........eee.............hhhhhhhhhh..hhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhh........hhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ma6 B  29 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ-TDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT 295
                                    38        48        58        68   | |  78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       
                                                                      72 |                                                                                                                                                                                                                             
                                                                        74
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MA6)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9BJF5_TOXGO | Q9BJF5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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        Q9BJF5_TOXGO | Q9BJF5: 3hx4 3i79 3i7b 3i7c 3ku2 3n51 3nyv 3sx9 3sxf 3t3u 3t3v 3upx 3upz 3v51 3v5p 3v5t 4ieb 4ifg 4ih8 4ihp 4jbv 4m84 4ona 4tzr 4wg3 4wg4 4wg5 4yga 4yjn 5dvr 5jms 5jn2 5t6a 5t6i 5t6k

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