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(-) Description

Title :  SET7/9Y335F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
 
Authors :  S. Horowitz, R. C. Trievel
Date :  13 Feb 13  (Deposition) - 08 Jan 14  (Release) - 08 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Set Domain, Lysine Methyltransferase, Transferase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Horowitz, L. M. Dirk, J. D. Yesselman, J. S. Nimtz, U. Adhikari, R. A. Mehl, S. Scheiner, R. L. Houtz, H. M. Al-Hashimi, R. C. Trievel
Conservation And Functional Importance Of Carbon-Oxygen Hydrogen Bonding In Adomet-Dependent Methyltransferases.
J. Am. Chem. Soc. V. 135 15536 2013
PubMed-ID: 24093804  |  Reference-DOI: 10.1021/JA407140K

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETD7
    Chains: A
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SETD7, KIAA1717, KMT7, SET7, SET9
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HISTONE H3-K4 METHYLTRANSFERASE SETD7, H3-K4-HMTASE SETD7, LYSINE N-METHYLTRANSFERASE 7, SET DOMAIN-CONTAINING PROTEIN 7, SET7/9
 
Molecule 2 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10
    Chains: B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHETICALLY PRODUCED PEPTIDE
    Synonym: STAF28, TRANSCRIPTION INITIATION FACTOR TFIID 30 KDA SUBUNIT, TAF(II)30, TAFII-30, TAFII30
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:226 , GLU A:228 , GLY A:264 , ASN A:265 , HIS A:293 , LYS A:294 , ASN A:296 , HIS A:297 , TRP A:352BINDING SITE FOR RESIDUE SAH A 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J7I)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:279 -Pro A:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J7I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J7I)

(-) Exons   (0, 0)

(no "Exon" information available for 4J7I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eeee.........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhhheeeee.......eeeee........eeeee..eeehhhhhhhhhhhhh...ee.....eee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee...........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j7i A 117 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAFGYDHSPPEAPEWYQVELKAFQATQQ 365
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336    || 351       361    
                                                                                                                                                                                                                                                          341|                  
                                                                                                                                                                                                                                                           347                  


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4j7i B 186 SKSKDR 191
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J7I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J7I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J7I)

(-) Gene Ontology  (43, 48)

Asymmetric Unit(hide GO term definitions)

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  SETD7_HUMAN | Q8WTS6
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  TAF10_HUMAN | Q12962
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  2.1.1.43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SETD7_HUMAN | Q8WTS6: 1h3i 1mt6 1muf 1n6a 1n6c 1o9s 1xqh 2f69 3cbm 3cbo 3cbp 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 3os5 3vuz 3vv0 4e47 4j7f 4j83 4j8o 4jds 4jlg 5ayf 5eg2
        TAF10_HUMAN | Q12962: 2f69 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 4j7f 4j83 4j8o 4wv4 5eg2

(-) Related Entries Specified in the PDB File

3m53 4j7f 4j83 4j8o