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(-) Description

Title :  SET7/9 N265A IN COMPLEX WITH ADOHCY AND TAF10 PEPTIDE
 
Authors :  G. M. Kroner, R. J. Fick, R. C. Trievel
Date :  26 Oct 15  (Deposition) - 13 Jan 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase-Transcription Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Fick, G. M. Kroner, B. Nepal, R. Magnani, S. Horowitz, R. L. Houtz, S. Scheiner, R. C. Trievel
Sulfur-Oxygen Chalcogen Bonding Mediates Adomet Recognition In The Lysine Methyltransferase Set7/9.
Acs Chem. Biol. V. 11 748 2016
PubMed-ID: 26713889  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00852

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETD7
    Chains: A
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS2
    Expression System Strain: ROSETTA2 BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SETD7, KIAA1717, KMT7, SET7, SET9
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HISTONE H3-K4 METHYLTRANSFERASE SETD7,H3-K4-HMTASE SETD7, LYSINE N-METHYLTRANSFERASE 7,SET DOMAIN-CONTAINING PROTEIN 7,SET7/9
 
Molecule 2 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 186-195
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: STAF28,TRANSCRIPTION INITIATION FACTOR TFIID 30 KDA SUBUNIT, TAFII30
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1MLZ1Mod. Amino AcidN-METHYL-LYSINE
2NA1Ligand/IonSODIUM ION
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:226 , GLU A:228 , GLY A:264 , HIS A:293 , LYS A:294 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , GLU A:356 , HOH A:515 , HOH A:518 , HOH A:584 , HOH A:642 , HOH A:653 , HOH A:662 , HOH A:695 , MLZ B:189binding site for residue SAH A 401
2AC2SOFTWARETYR A:122 , GLY A:126 , GLY A:127 , SER A:128 , VAL A:147 , TYR A:148 , HOH A:607binding site for residue NA A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EG2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:279 -Pro A:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EG2)

(-) Exons   (0, 0)

(no "Exon" information available for 5EG2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhh.eeeee.......eeeee........eeeee..eeehhhhhhh.hhhhh...ee.....eee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee...........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eg2 A 117 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGATLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPEAPEWYQVELKAFQATQ 364
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336    || 351       361   
                                                                                                                                                                                                                                                          341|                 
                                                                                                                                                                                                                                                           347                 


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5eg2 B 186 SKSkDR 191
                               |  
                             189-MLZ
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EG2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EG2)

(-) Gene Ontology  (43, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  5eg2
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  TAF10_HUMAN | Q12962
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  2.1.1.43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SETD7_HUMAN | Q8WTS6: 1h3i 1mt6 1muf 1n6a 1n6c 1o9s 1xqh 2f69 3cbm 3cbo 3cbp 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 3os5 3vuz 3vv0 4e47 4j7f 4j7i 4j83 4j8o 4jds 4jlg 5ayf
        TAF10_HUMAN | Q12962: 2f69 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 4j7f 4j7i 4j83 4j8o 4wv4

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5EG2)