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(-) Description

Title :  HETERODIMER OF TAF8/TAF10
 
Authors :  S. Trowitzsch
Date :  04 Nov 14  (Deposition) - 28 Jan 15  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription, Tbp-Associated Factor, Heterodimer, Histone Fold Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Trowitzsch, C. Viola, E. Scheer, S. Conic, V. Chavant, M. Fournier, G. Papai, I. O. Ebong, C. Schaffitzel, J. Zou, M. Haffke, J. Rappsilber C. V. Robinson, P. Schultz, L. Tora, I. Berger
Cytoplasmic Taf2-Taf8-Taf10 Complex Provides Evidence For Nuclear Holo-Tfiid Assembly From Preformed Submodules.
Nat Commun V. 6 6011 2015
PubMed-ID: 25586196  |  Reference-DOI: 10.1038/NCOMMS7011

(-) Compounds

Molecule 1 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP 112-212
    Gene: TAF10, TAF2A, TAF2H, TAFII30
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: STAF28,TRANSCRIPTION INITIATION FACTOR TFIID 30 KDA SUBUNIT, TAFII30,TAF10
 
Molecule 2 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 25-120
    Gene: TAF8, TAFII43, TBN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN TAUBE NUSS,TBP-ASSOCIATED FACTOR 43 KDA,TBP- ASSOCIATED FACTOR 8,TRANSCRIPTION INITIATION FACTOR TFIID 43 KDA SUBUNIT,HTAFII43,TAF8

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:121 , ARG A:150 , HOH A:401 , TYR B:79 , ARG B:85 , THR B:89 , LEU B:90binding site for residue GOL A 301
2AC2SOFTWARETYR A:138 , ARG A:141 , HIS B:30 , GLN B:66binding site for residue CL B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WV4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WV4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WV4)

(-) Exons   (0, 0)

(no "Exon" information available for 4WV4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4wv4 A 113 STPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKKYTLTMEDLTPALSEYGINVK 212
                                   122       132       142       152       162       172    || 196       206      
                                                                                          177|                    
                                                                                           192                    


Chain B from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4wv4 B  28 NYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT 120
                                    37        47        57        67        77        87        97       107       117
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WV4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WV4)

(-) Gene Ontology  (33, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wv4
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  TAF10_HUMAN | Q12962
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  TAF8_HUMAN | Q7Z7C8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAF10_HUMAN | Q12962: 2f69 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 4j7f 4j7i 4j83 4j8o 5eg2
        TAF8_HUMAN | Q7Z7C8: 4wv6 5fur

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WV4)