4JLG - JenaLib

Title :   SETD7 IN COMPLEX WITH INHIBITOR (R)-PFI-2 AND S-ADENOSYL-METHIONINE

Authors :   A. Dong, H. Wu, H. Zeng, M. El Bakkouri, D. Barsyte, M. Vedadi, J. Tatloc M. Bunnage, C. Bountra, C. H. Arrowsmith, A. M. Edwards, P. J. Brown, St Genomics Consortium (Sgc)

Date :   12 Mar 13 (Deposition) - 17 Apr 13 (Release) - 18 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Methyltransferase, Set Domain, Histone Modification, Transcription Regulation, Histone Lysine Methyltransferase, Inhibitor, S-Adenosyl- L-Methionine, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Barsyte-Lovejoy, F. Li, M. J. Oudhoff, J. H. Tatlock, A. Dong, H. Zeng, H. Wu, S. A. Freeman, M. Schapira, G. A. Senisterra, E. Kuznetsova, R. Marcellus, A. Allali-Hassani, S. Kennedy, J. P. Lambert, A. L. Couzens, A. Aman, A. C. Gingras, R. Al-Awar, P. V. Fish, B. S. Gerstenberger, L. Roberts, C. L. Benn, R. L. Grimley, M. J. Braam, F. M. Rossi, M. Sudol, P. J. Brown, M. E. Bunnage, D. R. Owen, C. Zaph, M. Vedadi, C. H. Arrowsmith
(R)-Pfi-2 Is A Potent And Selective Inhibitor Of Setd7 Methyltransferase Activity In Cells.
Proc. Natl. Acad. Sci. Usa V. 111 12853 2014
PubMed-ID: 25136132 | Reference-DOI: 10.1073/PNAS.1407358111

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 29)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:225 , ALA A:226 , GLU A:228 , GLY A:264 , ASN A:265 , HIS A:293 , LYS A:294 , ALA A:295 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , GLU A:356 , 1L8 A:402 , HOH A:513 , HOH A:535 , HOH A:563 , HOH A:567 , HOH A:574 , HOH A:583 , HOH A:695	BINDING SITE FOR RESIDUE SAM A 401
2	AC2	SOFTWARE	TYR A:245 , HIS A:252 , VAL A:255 , ASP A:256 , THR A:266 , LEU A:267 , SER A:268 , TYR A:305 , TYR A:335 , GLY A:336 , TYR A:337 , HIS A:339 , SER A:340 , SAM A:401 , HOH A:658	BINDING SITE FOR RESIDUE 1L8 A 402
3	AC3	SOFTWARE	SER B:225 , ALA B:226 , GLU B:228 , GLY B:264 , ASN B:265 , HIS B:293 , LYS B:294 , ALA B:295 , ASN B:296 , HIS B:297 , TYR B:335 , TRP B:352 , GLU B:356 , 1L8 B:402 , HOH B:519 , HOH B:535 , HOH B:559 , HOH B:563 , HOH B:584 , HOH B:607 , HOH B:619	BINDING SITE FOR RESIDUE SAM B 401
4	AC4	SOFTWARE	TYR B:245 , HIS B:252 , VAL B:255 , ASP B:256 , TRP B:260 , GLY B:264 , THR B:266 , LEU B:267 , SER B:268 , VAL B:274 , TYR B:305 , TYR B:335 , GLY B:336 , TYR B:337 , HIS B:339 , SER B:340 , SAM B:401 , HOH B:542	BINDING SITE FOR RESIDUE 1L8 B 402

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d4jlga1 A:117-193                                                            d4jlga2 A:194-363 Histone H3 K4-specific methyltransferase SET7/9 catalytic domain                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....eeee.........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhh.eeeee.......eeeee........eeeee..eeeehhhhhhhhhhhh...ee....eeee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee........ee..ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jlg A 117 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQAT 363
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356

Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains d4jlgb1 B:118-193                                                           d4jlgb2 B:194-363 Histone H3 K4-specific methyltransferase SET7/9 catalytic domain                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.....eeee.........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhh.eeeee.......eeeee........eeeee..eeeehhhhhhhhhhhh...ee....eeee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee........ee..ee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jlg B 118 VCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQAT 363
                                   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (23, 23)

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	Cis Peptide Bonds
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