4E47 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   SET7/9 IN COMPLEX WITH INHIBITOR (R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE AND S-ADENOSYLMETHIONINE

Authors :   J. R. Walker, H. Ouyang, A. Dong, P. Fish, A. Cook, D. Barsyte, M. Vedadi, J. Tatlock, D. Owen, M. Bunnage, C. Bountra, J. Weigelt, A. M. Edwards, C. H. Arrowsmith, P. J. Brown, Structural Genomics Consortium (Sg

Date :   12 Mar 12 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Ternary Complex, Set Domain, Methyltransferase, Inhibitor, S- Adenosylmethionine, Chromatin Regulator, Chromosomal Protein, Nucleus, Transcription, Transcription Regulation, Transferase, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Walker, H. Ouyang, A. Dong, P. Fish, A. Cook, D. Barsyte, M. Vedadi J. Tatlock, D. Owen, M. Bunnage, C. Bountra, A. M. Edwards, C. H. Arrowsmith, P. J. Brown, Structural Genomics Consortium (Sgc)
Setd7 In Complex With Inhibitor And Sam
To Be Published
PubMed: search

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETD7
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.43
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS2
	Expression System Strain	:	BL21(DE3)ROSETTA2
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	SET DOMAIN (UNP RESIDUES 109-366)
	Gene	:	SETD7, KIAA1717, KMT7, SET7, SET9
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SET7/9, HISTONE H3-K4 METHYLTRANSFERASE SETD7, H3-K4-HMTASE SETD7, LYSINE N-METHYLTRANSFERASE 7, SET DOMAIN-CONTAINING PROTEIN 7

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	0N6	4	Ligand/Ion	(R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	SAM	4	Ligand/Ion	S-ADENOSYLMETHIONINE
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	0N6	1	Ligand/Ion	(R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	0N6	1	Ligand/Ion	(R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE
4	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	0N6	1	Ligand/Ion	(R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE
4	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	0N6	1	Ligand/Ion	(R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE
4	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:226 , GLU A:228 , GLY A:264 , ASN A:265 , HIS A:293 , LYS A:294 , ALA A:295 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , HOH A:522 , HOH A:530 , HOH A:597 , HOH A:598 , HOH A:603 , HOH A:625 , HOH A:632	BINDING SITE FOR RESIDUE SAM A 401
02	AC2	SOFTWARE	TYR A:245 , HIS A:252 , ASP A:256 , ASN A:263 , GLY A:264 , THR A:266 , LEU A:267 , SER A:268 , TYR A:305 , TYR A:335 , GLY A:336 , TYR A:337 , HOH A:513	BINDING SITE FOR RESIDUE 0N6 A 402
03	AC3	SOFTWARE	CYS A:200 , SER A:202 , HOH A:506 , GLU D:351 , GLN D:354	BINDING SITE FOR RESIDUE BME A 403
04	AC4	SOFTWARE	TYR A:122 , HOH A:512 , HOH A:741 , TRP B:120 , TYR B:122	BINDING SITE FOR RESIDUE SO4 A 404
05	AC5	SOFTWARE	ALA B:226 , GLU B:228 , GLY B:264 , ASN B:265 , HIS B:293 , LYS B:294 , ALA B:295 , ASN B:296 , HIS B:297 , TYR B:335 , TRP B:352 , HOH B:930 , HOH B:969 , HOH B:972 , HOH B:985 , HOH B:988 , HOH B:1014 , HOH B:1038 , HOH B:1058	BINDING SITE FOR RESIDUE SAM B 800
06	AC6	SOFTWARE	TYR B:245 , HIS B:252 , ASP B:256 , ASN B:263 , GLY B:264 , THR B:266 , LEU B:267 , SER B:268 , TYR B:305 , TYR B:335 , GLY B:336 , TYR B:337 , HOH B:966	BINDING SITE FOR RESIDUE 0N6 B 801
07	AC7	SOFTWARE	ALA C:226 , GLU C:228 , GLY C:264 , ASN C:265 , HIS C:293 , LYS C:294 , ALA C:295 , ASN C:296 , HIS C:297 , TYR C:335 , TRP C:352 , HOH C:937 , HOH C:949 , HOH C:962 , HOH C:977 , HOH C:1015 , HOH C:1056 , HOH C:1057 , HOH C:1071	BINDING SITE FOR RESIDUE SAM C 800
08	AC8	SOFTWARE	TYR C:245 , HIS C:252 , ASP C:256 , TRP C:260 , ASN C:263 , GLY C:264 , THR C:266 , LEU C:267 , SER C:268 , TYR C:305 , TYR C:335 , GLY C:336 , TYR C:337 , HIS C:339 , HOH C:989	BINDING SITE FOR RESIDUE 0N6 C 801
09	AC9	SOFTWARE	ALA D:226 , GLU D:228 , GLY D:264 , ASN D:265 , HIS D:293 , LYS D:294 , ALA D:295 , ASN D:296 , HIS D:297 , TYR D:335 , TRP D:352 , HOH D:910 , HOH D:964 , HOH D:1011 , HOH D:1055 , HOH D:1059 , HOH D:1071	BINDING SITE FOR RESIDUE SAM D 800
10	BC1	SOFTWARE	TYR D:245 , HIS D:252 , ASP D:256 , TRP D:260 , ASN D:263 , GLY D:264 , THR D:266 , LEU D:267 , SER D:268 , TYR D:305 , TYR D:335 , GLY D:336 , TYR D:337 , HOH D:927	BINDING SITE FOR RESIDUE 0N6 D 801

(no "SS Bond" information available for 4E47)

Asymmetric Unit

No.	Residues
1	Glu A:279	-	Pro A:280
2	Glu B:279	-	Pro B:280
3	Glu C:279	-	Pro C:280
4	Glu D:279	-	Pro D:280

(no "SAP(SNP)/Variant" information available for 4E47)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	SETD7_HUMAN	214-336	4	A:214-336 B:214-336 C:214-336 D:214-336

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	SETD7_HUMAN	214-336	1	A:214-336 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	SETD7_HUMAN	214-336	1	- B:214-336 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	SETD7_HUMAN	214-336	1	- - C:214-336 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	SETD7_HUMAN	214-336	1	- - - D:214-336

Asymmetric Unit (6, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000274031	1a	ENSE00001831410	chr4:140477928-140477252	677	SETD7_HUMAN	1-14	14	0	-	-
1.3	ENST00000274031	3	ENSE00001613109	chr4:140468203-140468074	130	SETD7_HUMAN	14-57	44	0	-	-
1.4a	ENST00000274031	4a	ENSE00001643989	chr4:140454520-140454319	202	SETD7_HUMAN	57-124	68	4	A:116-124 B:116-124 C:117-124 D:116-124	9 9 8 9
1.5	ENST00000274031	5	ENSE00001671090	chr4:140450374-140450185	190	SETD7_HUMAN	125-188	64	4	A:125-188 B:125-188 C:125-188 D:125-188	64 64 64 64
1.6	ENST00000274031	6	ENSE00001802218	chr4:140444589-140444508	82	SETD7_HUMAN	188-215	28	4	A:188-215 B:188-215 C:188-215 D:188-215	28 28 28 28
1.7b	ENST00000274031	7b	ENSE00001663487	chr4:140441548-140441431	118	SETD7_HUMAN	215-254	40	4	A:215-254 B:215-254 C:215-254 D:215-254	40 40 40 40
1.8	ENST00000274031	8	ENSE00001734092	chr4:140439196-140439039	158	SETD7_HUMAN	255-307	53	4	A:255-307 B:255-307 C:255-307 D:255-307	53 53 53 53
1.9	ENST00000274031	9	ENSE00001192306	chr4:140432997-140427190	5808	SETD7_HUMAN	307-366	60	4	A:307-366 (gaps) B:307-366 (gaps) C:307-366 (gaps) D:307-366 (gaps)	60 60 60 60

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:246
 aligned with SETD7_HUMAN | Q8WTS6 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:253
                                                                                                                                                                                                                                                                                    366  
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365|  
          SETD7_HUMAN   116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQQK--   -
               SCOP domains d4e47a1 A:116-193                                                             d4e47a2 A:194-368 Histone H3 K4-specific methyltransferase SET7/9 catalytic domain                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeee.........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhh.eeeee.......eeeee........eeeee..eeeehhhhhhhhhhhh...ee....eeee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee.....-------....hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------SET  PDB: A:214-336 UniProt: 214-336                                                                                       -------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4aExon 1.5  PDB: A:125-188 UniProt: 125-188                       --------------------------Exon 1.7b  PDB: A:215-254               Exon 1.8  PDB: A:255-307 UniProt: 255-307            ------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------Exon 1.6  PDB: A:188-215    -------------------------------------------------------------------------------------------Exon 1.9  PDB: A:307-366 (gaps) UniProt: 307-366            -- Transcript 1 (2)
                 4e47 A 116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD-------GPEAPEWYQVELKAFQATQQKHH 368
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |      -|      355       365   
                                                                                                                                                                                                                                                        338     346

Chain B from PDB  Type:PROTEIN  Length:245
 aligned with SETD7_HUMAN | Q8WTS6 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:254
                                                                                                                                                                                                                                                                                    366   
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365|   
          SETD7_HUMAN   116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQQK---   -
               SCOP domains d4e47b1 B:116-193                                                             d4e47b2 B:194-369 Histone H3 K4-specific methyltransferase SET7/9 catalytic domain                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeeee........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhhheeeee.......eeeee........eeeee..eeehhhhhhhhhhhhh...ee.....eee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee.....---------..hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------SET  PDB: B:214-336 UniProt: 214-336                                                                                       --------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4aExon 1.5  PDB: B:125-188 UniProt: 125-188                       --------------------------Exon 1.7b  PDB: B:215-254               Exon 1.8  PDB: B:255-307 UniProt: 255-307            -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------Exon 1.6  PDB: B:188-215    -------------------------------------------------------------------------------------------Exon 1.9  PDB: B:307-366 (gaps) UniProt: 307-366            --- Transcript 1 (2)
                 4e47 B 116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD---------EAPEWYQVELKAFQATQQKHHH 369
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |      -  |    355       365    
                                                                                                                                                                                                                                                        338       348

Chain C from PDB  Type:PROTEIN  Length:245
 aligned with SETD7_HUMAN | Q8WTS6 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:253
                                                                                                                                                                                                                                                                                   366   
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366   
          SETD7_HUMAN   117 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQQK---   -
               SCOP domains d4e47c1 C:117-193                                                            d4e47c2 C:194-369 Histone H3 K4-specific methyltransferase SET7/9 catalytic domain                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhhheeeee.......eeeee........eeeee..eeehhhhhhh.hhhhh...ee.....eee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee.......--------.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------SET  PDB: C:214-336 UniProt: 214-336                                                                                       --------------------------------- PROSITE
           Transcript 1 (1) 1.4a    Exon 1.5  PDB: C:125-188 UniProt: 125-188                       --------------------------Exon 1.7b  PDB: C:215-254               Exon 1.8  PDB: C:255-307 UniProt: 255-307            -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------Exon 1.6  PDB: C:188-215    -------------------------------------------------------------------------------------------Exon 1.9  PDB: C:307-366 (gaps) UniProt: 307-366            --- Transcript 1 (2)
                 4e47 C 117 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS--------APEWYQVELKAFQATQQKHHH 369
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336   |     -  |    356       366   
                                                                                                                                                                                                                                                         340      349

Chain D from PDB  Type:PROTEIN  Length:250
 aligned with SETD7_HUMAN | Q8WTS6 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:254
                                                                                                                                                                                                                                                                                    366   
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365|   
          SETD7_HUMAN   116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQQK---   -
               SCOP domains d4e47d1 D:116-193                                                             d4e47d2 D:194-369 Histone H3 K4-specific methyltransferase SET7/9 catalytic domain                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeeee........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhhheeeee.......eeeee........eeeee..eeehhhhhhh.hhhhh...ee.....eee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee........----....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------SET  PDB: D:214-336 UniProt: 214-336                                                                                       --------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4aExon 1.5  PDB: D:125-188 UniProt: 125-188                       --------------------------Exon 1.7b  PDB: D:215-254               Exon 1.8  PDB: D:255-307 UniProt: 255-307            -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------Exon 1.6  PDB: D:188-215    -------------------------------------------------------------------------------------------Exon 1.9  PDB: D:307-366 (gaps) UniProt: 307-366            --- Transcript 1 (2)
                 4e47 D 116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSP----GPEAPEWYQVELKAFQATQQKHHH 369
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335     |   -|      355       365    
                                                                                                                                                                                                                                                           341  346

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4E47)

(no "Pfam Domain" information available for 4E47)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (SETD7_HUMAN | Q8WTS6)

molecular function
	GO:0003682	chromatin binding	Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
	GO:0018024	histone-lysine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0002039	p53 binding	Interacting selectively and non-covalently with one of the p53 family of proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016279	protein-lysine N-methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0070828	heterochromatin organization	Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin.
	GO:0034968	histone lysine methylation	The modification of a histone by addition of one or more methyl groups to a lysine residue.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0018027	peptidyl-lysine dimethylation	The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine.
	GO:0018022	peptidyl-lysine methylation	The methylation of peptidyl-lysine to form either the mono-, di- or trimethylated derivative.
	GO:0018026	peptidyl-lysine monomethylation	The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0051570	regulation of histone H3-K9 methylation	Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0045471	response to ethanol	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	4e47
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	2.1.1.43
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(no "Related Entries Specified in the PDB File" available for 4E47)

Description

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Ligands, Modified Residues, Ions (4, 10)

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Exons (6, 24)

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