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(-) Description

Title :  SET7/9 IN COMPLEX WITH TAF10K189A PEPTIDE AND ADOHCY
 
Authors :  S. Horowitz, R. C. Trievel
Date :  14 Feb 13  (Deposition) - 08 Jan 14  (Release) - 08 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Set Domain, Lysine Methyltransferase, Transferase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Horowitz, L. M. Dirk, J. D. Yesselman, J. S. Nimtz, U. Adhikari, R. A. Mehl, S. Scheiner, R. L. Houtz, H. M. Al-Hashimi, R. C. Trievel
Conservation And Functional Importance Of Carbon-Oxygen Hydrogen Bonding In Adomet-Dependent Methyltransferases.
J. Am. Chem. Soc. V. 135 15536 2013
PubMed-ID: 24093804  |  Reference-DOI: 10.1021/JA407140K

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETD7
    ChainsA
    EC Number2.1.1.43
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneSETD7, KIAA1717, KMT7, SET7, SET9
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHISTONE H3-K4 METHYLTRANSFERASE SETD7, H3-K4-HMTASE SETD7, LYSINE N-METHYLTRANSFERASE 7, SET DOMAIN-CONTAINING PROTEIN 7, SET7/9
 
Molecule 2 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10
    ChainsB
    EngineeredYES
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsSYNTHETICALLY PRODUCED PEPTIDE
    SynonymSTAF28, TRANSCRIPTION INITIATION FACTOR TFIID 30 KDA SUBUNIT, TAF(II)30, TAFII-30, TAFII30
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:226 , GLU A:228 , GLY A:264 , ASN A:265 , HIS A:293 , LYS A:294 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , HOH A:930 , HOH A:953 , HOH A:977 , HOH A:995 , HOH A:1014 , HOH A:1037 , HOH A:1057 , HOH A:1077 , HOH A:1094BINDING SITE FOR RESIDUE SAH A 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J8O)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:279 -Pro A:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J8O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J8O)

(-) Exons   (0, 0)

(no "Exon" information available for 4J8O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeee.........eeeeeee.....eeeeeeee..eeeeeeeeeeeeee..eeeeee.....ee.................hhhhhh.eeeee.......eeeee........eeeee..eeehhhhhhh.hhhhh...ee.....eee..............hhhhhee.....eeeeeeee...eeeeeeee........eeee............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j8o A 116 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPGPEAPEWYQVELKAFQATQ 364
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335     ||349       359     
                                                                                                                                                                                                                                                           341|                  
                                                                                                                                                                                                                                                            346                  

Chain B from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4j8o B 186 SKSADRK 192

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J8O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J8O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J8O)

(-) Gene Ontology  (43, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SETD7_HUMAN | Q8WTS61h3i 1mt6 1muf 1n6a 1n6c 1o9s 1xqh 2f69 3cbm 3cbo 3cbp 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 3os5 3vuz 3vv0 4e47 4j7f 4j7i 4j83 4jds 4jlg 5ayf 5eg2
        TAF10_HUMAN | Q129622f69 3m53 3m54 3m55 3m56 3m57 3m58 3m59 3m5a 4j7f 4j7i 4j83 4wv4 5eg2

(-) Related Entries Specified in the PDB File

4j7f 4j7i 4j83