4HHG - JenaLib

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Biol. Unit 1 - sites

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Description

Title :   CRYSTAL STRUCTURE OF THE PSEUDOMONAS AERUGINOSA AZURIN, RUH107NO YOH109

Authors :   N. Herrera, J. J. Warren, H. B. Gray

Date :   09 Oct 12 (Deposition) - 21 Nov 12 (Release) - 21 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Greek Key, Electron Transfer, Nitrosylated, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. J. Warren, N. Herrera, M. G. Hill, J. R. Winkler, H. B. Gray
Electron Flow Through Nitrotyrosinate In Pseudomonas Aeruginosa Azurin.
J. Am. Chem. Soc. V. 135 11151 2013
PubMed-ID: 23859602 | Reference-DOI: 10.1021/JA403734N

Compounds

Molecule 1 - AZURIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Gene	:	AZU, PA4922
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	208964
	Strain	:	ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Count	Type	Full Name
1	CU	1	Ligand/Ion	COPPER (II) ION
2	DRU	1	Ligand/Ion	DELTA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)
3	NIY	1	Mod. Amino Acid	META-NITRO-TYROSINE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	DRU	1	Ligand/Ion	DELTA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)
3	NIY	1	Mod. Amino Acid	META-NITRO-TYROSINE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	DRU	2	Ligand/Ion	DELTA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)
3	NIY	2	Mod. Amino Acid	META-NITRO-TYROSINE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:45 , HIS A:46 , CYS A:112 , HIS A:117 , MET A:121	BINDING SITE FOR RESIDUE CU A 201
2	AC2	SOFTWARE	GLN A:28 , THR A:96 , GLU A:106 , HIS A:107 , THR A:126 , LYS A:128	BINDING SITE FOR RESIDUE DRU A 202

SS Bonds (1, 1)

Asymmetric Unit

No.	Residues
1	A:3	-	A:26

Cis Peptide Bonds (0, 0)

(no "Cis Peptide Bond" information available for 4HHG)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 4HHG)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 4HHG)

Exons (0, 0)

(no "Exon" information available for 4HHG)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4hhga_ A: Azurin                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeeee....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhhh....eeee....hhhhh.eeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hhg A   1 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNFVLSTAADMQGVVTDGMASGLDKDFLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEEEHFyFFCTFPGHSALMKGTLTLK 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        
                                                                                                                                      109-NIY

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: Plastocyanin/azurin-like (241)

Protein domain: Azurin (95)

Pseudomonas aeruginosa [TaxId: 287] (78)

d4hhga_

CATH Domains (0, 0)

(no "CATH Domain" information available for 4HHG)

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 4HHG)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Visualization

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	Ligands, Modified Residues, Ions
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		DRU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NIY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4hhg)

Biological Units
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		Biological Unit 2	[ Jena3D ]

Still Images

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
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	4hhg
		Family and Domain Information	:	ProDom \| SYSTERS
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Access by UniProt ID/Accession number
	AZUR_PSEAE \| P00282
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
	AZUR_PSEAE \| P00282	:	1ag0 1azn 1azr 1azu 1bex 1cc3 1e5y 1e5z 1e65 1e67 1etj 1ezl 1gr7 1i53 1ils 1ilu 1jvl 1jvo 1jze 1jzf 1jzg 1jzh 1jzi 1jzj 1nzr 1r1c 1vlx 1xb3 1xb6 1xb8 2azu 2fnw 2ft6 2ft7 2ft8 2fta 2ghz 2gi0 2hx7 2hx8 2hx9 2hxa 2i7o 2i7s 2idf 2iwe 2oj1 2tsa 2tsb 2xv0 2xv2 2xv3 3azu 3fpy 3fq1 3fq2 3fqy 3fs9 3fsa 3fsv 3fsw 3fsz 3ft0 3ibo 3in0 3in2 3jt2 3jtb 3n2j 3np3 3np4 3oqr 3u25 3uge 4azu 4bww 4hhw 4hip 4hz1 4jkn 4k9j 4ko5 4ko6 4ko7 4ko9 4kob 4koc 4mfh 4qkt 4qlw 4wkx 5azu 5i26 5i28

Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HHG)