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Title :   PSEUDOMONAS AERUGINOSA AZURIN RE(PHEN)(CO)3(HIS83)

Authors :   B. R. Crane, A. J. Di Bilio, J. R. Winkler, H. B. Gray

Date :   16 Sep 01 (Deposition) - 17 Oct 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.62

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Blue-Copper, Electron-Transfer, Rhenium, Tunneling, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. R. Crane, A. J. Di Bilio, J. R. Winkler, H. B. Gray
Electron Tunneling In Single Crystals Of Pseudomonas Aeruginosa Azurins.
J. Am. Chem. Soc. V. 123 11623 2001
PubMed-ID: 11716717 | Reference-DOI: 10.1021/JA0115870
(for further references see the PDB file header)

Molecule 1 - AZURIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PET9A(ASA)
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	CU	2	Ligand/Ion	COPPER (II) ION
2	IME	1	Ligand/Ion	TETRA(IMIDAZOLE)DIAQUACOPPER (II)
3	REP	2	Ligand/Ion	(1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM(I)

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	IME	1	Ligand/Ion	TETRA(IMIDAZOLE)DIAQUACOPPER (II)
3	REP	1	Ligand/Ion	(1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM(I)

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CU	-1	Ligand/Ion	COPPER (II) ION
2	IME	-1	Ligand/Ion	TETRA(IMIDAZOLE)DIAQUACOPPER (II)
3	REP	1	Ligand/Ion	(1,10 PHENANTHROLINE)-(TRI-CARBON MONOXIDE) RHENIUM(I)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:45 , HIS A:46 , CYS A:112 , HIS A:117 , MET A:121	BINDING SITE FOR RESIDUE CU A 901
2	AC2	SOFTWARE	GLY B:245 , HIS B:246 , CYS B:312 , HIS B:317 , MET B:321	BINDING SITE FOR RESIDUE CU B 902
3	AC3	SOFTWARE	HIS A:35 , PRO A:36 , GLY A:37 , ASN A:38 , LYS A:74 , ASP A:77 , VAL A:80 , HIS A:83 , SER A:89 , GLY A:90 , HOH A:1000 , HOH A:1101	BINDING SITE FOR RESIDUE REP A 903
4	AC4	SOFTWARE	PRO B:236 , GLY B:237 , ASN B:238 , LYS B:274 , ASP B:277 , VAL B:280 , HIS B:283 , SER B:289 , GLY B:290	BINDING SITE FOR RESIDUE REP B 904
5	AC5	SOFTWARE	LYS A:24 , CYS A:26 , LYS A:27 , VAL A:99 , SER A:100 , LEU A:102 , LEU A:127 , LYS B:224 , CYS B:226 , LYS B:227 , VAL B:299 , SER B:300 , LEU B:302 , LEU B:327	BINDING SITE FOR RESIDUE IME A 2000

Asymmetric Unit

No.	Residues
1	A:3	-	A:26
2	B:203	-	B:226

(no "Cis Peptide Bond" information available for 1JZI)

(no "SAP(SNP)/Variant" information available for 1JZI)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AZUR_PSEAE	125-141	2	A:105-121 B:305-321

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AZUR_PSEAE	125-141	1	A:105-121 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AZUR_PSEAE	125-141	1	- B:305-321

(no "Exon" information available for 1JZI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:128
 aligned with AZUR_PSEAE | P00282 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:128
                                    30        40        50        60        70        80        90       100       110       120       130       140        
           AZUR_PSEAE    21 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 148
               SCOP domains d1jzia_ A: Azurin                                                                                                                SCOP domains
               CATH domains 1jziA00 A:1-128 Cupredoxins -  blue copper proteins                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeee.....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhh.....eeee....hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------COPPER_BLUE      ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jzi A   1 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 128
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with AZUR_PSEAE | P00282 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:128
                                    30        40        50        60        70        80        90       100       110       120       130       140        
           AZUR_PSEAE    21 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 148
               SCOP domains d1jzib_ B: Azurin                                                                                                                SCOP domains
               CATH domains 1jziB00 B:201-328 Cupredoxins -  blue copper proteins                                                                            CATH domains
           Pfam domains (1) Copper-bind-1jziB01 B:201-328                                                                                                    Pfam domains (1)
           Pfam domains (2) Copper-bind-1jziB02 B:201-328                                                                                                    Pfam domains (2)
         Sec.struct. author ...eeeee..........eeeee....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhh.....eeee..........eeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------COPPER_BLUE      ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jzi B 201 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 328
                                   210       220       230       240       250       260       270       280       290       300       310       320

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: Plastocyanin/azurin-like (241)

Protein domain: Azurin (95)

Pseudomonas aeruginosa [TaxId: 287] (78)

1a	d1jzia_	A:
1b	d1jzib_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Cupredoxins - blue copper proteins (420)

Pseudomonas aeruginosa. Organism_taxid: 287. (21)

1a	1jziA00	A:1-128
1b	1jziB00	B:201-328

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: CU_oxidase (192)

Family: Copper-bind (82)

Pseudomonas aeruginosa (25)

1a	Copper-bind-1jziB01	B:201-328
1b	Copper-bind-1jziB02	B:201-328

Asymmetric Unit(hide GO term definitions)

Chain A,B (AZUR_PSEAE | P00282)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	1jzi
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1jze	PSEUDOMONAS AERUGINOSA AZURIN RU(BPY)2(IM)(HIS83)
1jzf	PSEUDOMONAS AERUGINOSA OXIDIZED AZURIN(CU2+) RU(TPY)(PHEN) (HIS83)
1jzg	PSEUDOMONAS AERUGINOSA REDUCED AZURIN (CU1+) RU(TPY)(PHEN) (HIS83)
1jzh	PSEUDOMONAS AERUGINOSA AZURIN RU(TPY)(BPY)(HIS83)
1jzj	PSEUDOMONAS AERUGINOSA AZURIN OS(BPY)2(IM)(HIS83)

Description

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Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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