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(-) Description

Title :  MERCURY METALLATED PSEUDOMONAS AERUGINOSA AZURIN AT 1.54 A
 
Authors :  A. P. Zampino, F. M. Masters, E. L. Bladholm, S. B. Berry, M. J. Panzner, C. J. Ziegler
Date :  10 Mar 13  (Deposition) - 19 Feb 14  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Electron Transport, Mercury Metallation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Zampino, F. M. Masters, E. L. Bladholm, M. J. Panzner, S. M. Berry, T. C. Leeper, C. J. Ziegler
Mercury Metallation Of The Copper Protein Azurin And Structural Insight Into Possible Heavy Metal Reactivity.
J. Inorg. Biochem. V. 141 152 2014
PubMed-ID: 25265377  |  Reference-DOI: 10.1016/J.JINORGBIO.2014.09.003

(-) Compounds

Molecule 1 - AZURIN
    Chains: A, B, C, D
    EC Number: 1.20.9.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 21-148
    Gene: AZU, AZU PA4922, PA4922
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1HG5Ligand/IonMERCURY (II) ION
2NO37Ligand/IonNITRATE ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2NO32Ligand/IonNITRATE ION
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2NO31Ligand/IonNITRATE ION
3SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2NO3-1Ligand/IonNITRATE ION
3SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (2, 5)
No.NameCountTypeFull Name
1HG-1Ligand/IonMERCURY (II) ION
2NO34Ligand/IonNITRATE ION
3SO41Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:45 , HIS A:46 , CYS A:112 , HIS A:117 , MET A:121BINDING SITE FOR RESIDUE HG A 201
02AC2SOFTWAREMET A:56 , HOH A:305 , HOH A:340 , HOH A:347 , HOH A:409 , MET B:56 , HOH B:362BINDING SITE FOR RESIDUE HG A 202
03AC3SOFTWARECYS A:26 , LYS A:27 , GLN A:28 , PRO B:40 , ASN B:42 , HOH B:304 , LEU D:68BINDING SITE FOR RESIDUE NO3 A 203
04AC4SOFTWAREMET A:109 , LYS A:122 , THR A:124 , HOH A:346 , HOH A:399 , GLN D:14BINDING SITE FOR RESIDUE NO3 A 204
05AC5SOFTWAREGLY B:45 , HIS B:46 , CYS B:112 , HIS B:117 , MET B:121BINDING SITE FOR RESIDUE HG B 201
06AC6SOFTWARESER B:94 , VAL B:95 , THR B:96 , LYS C:41 , ASN C:42BINDING SITE FOR RESIDUE NO3 B 202
07AC7SOFTWAREGLY C:45 , HIS C:46 , CYS C:112 , HIS C:117 , MET C:121BINDING SITE FOR RESIDUE HG C 201
08AC8SOFTWAREGLY D:45 , HIS D:46 , CYS D:112 , HIS D:117 , MET D:121BINDING SITE FOR RESIDUE HG D 201
09AC9SOFTWAREGLU D:2 , CYS D:3 , SER D:4 , THR D:21 , VAL D:22 , ASP D:23 , CYS D:26 , PHE D:29 , HOH D:378 , HOH D:385BINDING SITE FOR RESIDUE NO3 D 202
10BC1SOFTWARETHR D:96 , PHE D:97 , ASP D:98 , LYS D:101BINDING SITE FOR RESIDUE NO3 D 203
11BC2SOFTWAREPRO D:75 , ASP D:76 , HIS D:83 , HOH D:330 , HOH D:332BINDING SITE FOR RESIDUE NO3 D 204
12BC3SOFTWAREGLN A:12 , GLN A:14 , HOH A:327 , MET D:109 , LYS D:122 , THR D:124 , HOH D:376BINDING SITE FOR RESIDUE NO3 D 205
13BC4SOFTWARETHR A:96 , PHE A:97 , ASP A:98 , LYS A:101 , LYS D:41 , HOH D:371 , HOH D:397 , HOH D:408BINDING SITE FOR RESIDUE SO4 D 206

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:3 -A:26
2B:3 -B:26
3C:3 -C:26
4D:3 -D:26

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JKN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JKN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JKN)

(-) Exons   (0, 0)

(no "Exon" information available for 4JKN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4jkna_ A: Azurin                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeeee....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhh.....eeee....hhhhh.eeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jkn A   1 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4jknb_ B: Azurin                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeeee....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhh.....eeee....hhhhh.eeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jkn B   1 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        


Chain C from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4jknc_ C: Azurin                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeee.....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhh.....eeee....hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jkn C   1 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        


Chain D from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4jknd_ D: Azurin                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeee.....eeeeeee.....hhhhhh...eeee..hhhhhhhhhhhhhhhhh..........ee........eeeeeee.hhh.....eeee....hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jkn D   1 AECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JKN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JKN)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  4jkn
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  AZUR_PSEAE | P00282
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AZUR_PSEAE | P00282: 1ag0 1azn 1azr 1azu 1bex 1cc3 1e5y 1e5z 1e65 1e67 1etj 1ezl 1gr7 1i53 1ils 1ilu 1jvl 1jvo 1jze 1jzf 1jzg 1jzh 1jzi 1jzj 1nzr 1r1c 1vlx 1xb3 1xb6 1xb8 2azu 2fnw 2ft6 2ft7 2ft8 2fta 2ghz 2gi0 2hx7 2hx8 2hx9 2hxa 2i7o 2i7s 2idf 2iwe 2oj1 2tsa 2tsb 2xv0 2xv2 2xv3 3azu 3fpy 3fq1 3fq2 3fqy 3fs9 3fsa 3fsv 3fsw 3fsz 3ft0 3ibo 3in0 3in2 3jt2 3jtb 3n2j 3np3 3np4 3oqr 3u25 3uge 4azu 4bww 4hhg 4hhw 4hip 4hz1 4k9j 4ko5 4ko6 4ko7 4ko9 4kob 4koc 4mfh 4qkt 4qlw 4wkx 5azu 5i26 5i28

(-) Related Entries Specified in the PDB File

3uge SILVER METALLATED PSEUDOMONAS AERUGINOSA AZURIN AT 1.70 A